ENH: Support for multiple --output-spaces
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Target templates are now set as an iterable for the new spatial normalization workflow (nipreps#72).
…ults from niworkflows for reports
oesteban
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Apr 30, 2019
This is a large refactor using two major inter-related features: - Uses nipreps/smriprep#72 and its continuation within nipreps/smriprep#75 to permit the specification of several spatial normalization targets (close nipreps#1558). - Uses the refactor of Reports generation of nipreps/niworkflows#344, which enables rendering reports with several normalization spaces. Correspondingly, report generation code and config files have been removed. Correspondingly, the new interface for ``--output-spaces`` is also incorporated (close nipreps#1588).
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This PR makes more flexible the spatial normalization, setting a list of target templates as an iterable for the new spatial normalization workflow (#72).
This PR also makes use of the refactored reports of nipreps/niworkflows#344, which allow rendering several spatial normalization reportlets. To do so, the nomenclature of reportlets has been adapted and resembles a BIDS-like organization.