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CITGM disk is full #1908

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BridgeAR opened this issue Sep 4, 2019 · 25 comments
Closed

CITGM disk is full #1908

BridgeAR opened this issue Sep 4, 2019 · 25 comments
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@BridgeAR
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BridgeAR commented Sep 4, 2019

We have lots of CITGM errors due to a full hard drive (ENOSPC).

It would be great if that could be looked at. I guess we somehow miss to delete old data?

@mhdawson
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mhdawson commented Sep 6, 2019

@BridgeAR do you have any more info? Which machines/platforms?

@BridgeAR
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BridgeAR commented Sep 6, 2019

Seems like OSX 10.11 was full. The latest CITGM run did not show any failures but I guess the memory is still at it's limit and should be looked at.

Example failure:

https://ci.nodejs.org/view/Node.js-citgm/job/citgm-smoker/1990/nodes=osx1011/testReport/junit/(root)/citgm/microtime_v3_0_0/

AIX also seems to show some memory constraints:

https://ci.nodejs.org/view/Node.js-citgm/job/citgm-smoker/1990/nodes=aix61-ppc64/testReport/junit/(root)/citgm/node_report_v2_2_8/

@mhdawson
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mhdawson commented Sep 6, 2019

@sam-github can you add to the list to look at the AIX ones.

@sam-github
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I'm trying to reproduce node-report's tests failing on AIX. A couple hurdles to overcome first (getting curl working, getting node installed, etc.).

@sam-github
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Unfortunately, node-report's tests aren't obviously incapable of running on AIX:

$ npm test

> node-report@2.2.8 test /home/iojs/sam-github/node-report
> tap --no-esm --timeout=300 test/test*.js

test/test-api-bad-processobj.js ..................... 28/28
test/test-api-bad-processversion.js ................. 28/28
test/test-api-bad-processversions.js ................ 28/28
test/test-api-getreport.js .......................... 28/28
test/test-api-nohooks.js ............................ 28/28
test/test-api-noversioninfo.js ...................... 28/28
test/test-api-pass-error.js ......................... 30/30
test/test-api-uvhandles.js .......................... 39/39
test/test-api.js .................................... 28/28
test/test-exception.js .............................. 29/29
test/test-fatal-error.js ............................ 27/27
test/test-signal.js ................................. 29/29
total ............................................. 350/350

  350 passing (7s)

  ok

I wonder if the ci job was building in parallel with others? Can anyone think of any reason memory would have been particularly low? For example, does citgm run multiple tests in parallel?

@richardlau
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Still seems to be occurring. From the 12.13.0 proposal:

AIX: https://ci.nodejs.org/job/citgm-smoker/2061/nodes=aix61-ppc64/console

03:25:16 ++ citgm-all -J --nodedir=/home/iojs/build/workspace/citgm-smoker/nodes/aix61-ppc64/node -v warn -x /home/iojs/build/workspace/citgm-smoker/nodes/aix61-ppc64/smoker/report.xml -q error --tmpDir /ramdisk0/citgm
03:28:15 warn: cheerio npm-install:| npm ERR! code ENOSPC                                                                                                     
03:28:15 warn:                     | npm ERR! syscall read                                                                                                    
03:28:15 warn:                     | npm ERR! errno -28                                                                                                       
03:28:15 Build step 'Conditional steps (multiple)' marked build as failure

macOS: https://ci.nodejs.org/job/citgm-smoker/2061/nodes=osx1011/console

03:54:55   c++ -o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/api/api-arguments.o ../deps/v8/src/api/api-arguments.cc '-DV8_GYP_BUILD' '-DV8_TYPED_ARRAY_MAX_SIZE_IN_HEAP=64' '-D_DARWIN_USE_64_BIT_INODE=1' '-DOPENSSL_NO_PINSHARED' '-DOPENSSL_THREADS' '-DV8_TARGET_ARCH_X64' '-DV8_EMBEDDER_STRING="-node.12"' '-DENABLE_DISASSEMBLER' '-DV8_PROMISE_INTERNAL_FIELD_COUNT=1' '-DENABLE_MINOR_MC' '-DV8_INTL_SUPPORT' '-DV8_USE_SNAPSHOT' '-DV8_CONCURRENT_MARKING' '-DV8_EMBEDDED_BUILTINS' '-DV8_USE_SIPHASH' '-DDISABLE_UNTRUSTED_CODE_MITIGATIONS' '-DV8_WIN64_UNWINDING_INFO' '-DICU_UTIL_DATA_IMPL=ICU_UTIL_DATA_STATIC' '-DUCONFIG_NO_SERVICE=1' '-DU_ENABLE_DYLOAD=0' '-DU_STATIC_IMPLEMENTATION=1' '-DU_HAVE_STD_STRING=1' '-DUCONFIG_NO_BREAK_ITERATION=0' -I../deps/v8 -I../deps/v8/include -I/Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj/gen/inspector-generated-output-root -I../deps/v8/third_party/inspector_protocol -I/Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj/gen/torque-output-root -I/Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj/gen/generate-bytecode-output-root -I../deps/icu-small/source/i18n -I../deps/icu-small/source/common  -O3 -gdwarf-2 -fstrict-aliasing -mmacosx-version-min=10.10 -arch x86_64 -Wall -Wendif-labels -W -Wno-unused-parameter -std=gnu++1y -stdlib=libc++ -fno-rtti -fno-exceptions -fno-strict-aliasing -MMD -MF /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/.deps//Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/api/api-arguments.o.d.raw   -c
03:54:59   rm -f /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/libv8_base_without_compiler.a && ./gyp-mac-tool filter-libtool libtool  -static -o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/libv8_base_without_compiler.a /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/api/api-arguments.o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/api/api-natives.o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/api/api.o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/asmjs/asm-js.o /Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/obj.target/v8_base_without_compiler/deps/v8/src/asmjs/asm-parser.o 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03:55:01 fatal error: /Library/Developer/CommandLineTools/usr/bin/libtool: can't write to output file (No space left on device)
03:55:01 make[1]: *** [/Users/iojs/build/workspace/citgm-smoker/nodes/osx1011/node/out/Release/libv8_base_without_compiler.a] Error 1

@richardlau
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For example, does citgm run multiple tests in parallel?

Yes, if the -J flag is passed to citgm-all (which it is in the job parameters by default) then CITGM will run tests for modules in parallel.

@sam-github
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sam-github commented Oct 18, 2019

IIUC, this is current AIX space, and its mostly empty:

core/build (master *$% u=) % parallel-ssh -i -h hosts/aix61-ppc64_be df /ramdisk0
[2] 11:52:37 [SUCCESS] test-osuosl-aix61-ppc64_be-1
Filesystem    512-blocks      Free %Used    Iused %Iused Mounted on
/dev/ramdisk0   10000000   9721440    3%        5     1% /ramdisk0
[3] 11:52:37 [SUCCESS] test-osuosl-aix61-ppc64_be-2
/dev/ramdisk0   10000000   9699344    4%        5     1% /ramdisk0
[4] 11:52:38 [SUCCESS] test-osuosl-aix61-ppc64_be-3
/dev/ramdisk0   10000000   9700960    3%        5     1% /ramdisk0

Size is relative, but those are fairly large working spaces. If citgm needs more, I can up them some amount, I think (they eat RAM, though, so eventually we'll hit problems in other ways).

Or perhaps citgm should be less agressive in its parallelism?

@richardlau
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Or perhaps citgm should be less agressive in its parallelism?

There's a -j <num> (lowercase) parameter for parallelism (the uppercase autodetects). I'll experiment a bit when the CI looks less busy.

@richardlau
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https://ci.nodejs.org/job/citgm-smoker/2064/ (just AIX and macOS) is with citgm-all -j 2 against the 12.13.0 proposal.

macOS fails as per #1908 (comment) (it's running out of space during the Node.js compilation phase and doesn't get to run citgm).

AIX ran to completion, so reduced parallelism is probably something we need to look at. For auto-parallelism (-J) CITGM does:

const cpus = os.cpus().length;
if (app.autoParallel || (app.parallel && app.parallel > cpus)) {
  app.parallel = cpus;
  log.info('cores', `running tests using ${app.parallel} cores`);
}
if (app.parallel && app.parallel + 1 > process.getMaxListeners()) {
  process.setMaxListeners(app.parallel + 1);
}

@richardlau
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For the record https://ci.nodejs.org/job/citgm-smoker/2065/nodes=aix61-ppc64/ is with -J and passed. I switched the loglevel to info to get:

17:11:29 ++ citgm-all -J --nodedir=/home/iojs/build/workspace/citgm-smoker/nodes/aix61-ppc64/node -v info -x /home/iojs/build/workspace/citgm-smoker/nodes/aix61-ppc64/smoker/report.xml -q error --tmpDir /ramdisk0/citgm
17:11:30 info: cores               | running tests using 20 cores

20 is possibly too high a number if we consider disk space (although in this instance we didn't run out).

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rvagg commented Oct 20, 2019

maybe citgm needs some rough cleanup scripts, it really makes a mess of the machines it runs on, we have some serious space constraints on some of these machines - macos being one, manual cleanup is not sustainable and "clean workspace" doesn't come close to cleaning up the resources made by citgm runs (lots of things in ~/).

@richardlau
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richardlau commented Oct 20, 2019

maybe citgm needs some rough cleanup scripts, it really makes a mess of the machines it runs on, we have some serious space constraints on some of these machines - macos being one, manual cleanup is not sustainable and "clean workspace" doesn't come close to cleaning up the resources made by citgm runs (lots of things in ~/).

@rvagg Do you have any examples? Even if we had rough cleanup scripts I'd presume we'd wouldn't want to blindly wipe everything in ~/.

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rvagg commented Oct 20, 2019

This is on a debian8 citgm machine, I'm not sure when the last time it was cleaned up was but I occasionally manually remove these directories, which are only on citgm machines so they are obvious. They all come from various packages and addons that leave cruft in their wake.

$ du -sh .babel.json .cache/ .config/ .node-clinic-rc  .node-gyp/ .node-spawn-wrap-/ .npm* .standard-* .yarn/ .yo-rc-global.json
6.4M	.babel.json
535M	.cache/
28K	.config/
4.0K	.node-clinic-rc
13M	.node-gyp/
4.0K	.node-spawn-wrap-/
2.9M	.npm
4.0K	.npmrc
140K	.standard-cache
432K	.standard-v12-cache
180K	.standard-v14-cache
8.0K	.yarn/
4.0K	.yo-rc-global.json

.cache is interesting here:

$ du -sh .cache/*
60M	.cache/electron
144K	.cache/fontconfig
8.0K	.cache/JNA
16K	.cache/js-v8flags
127M	.cache/node-gyp
349M	.cache/yarn

it seems less severe on a macos machine (which looks like it was more recently cleaned):

$ du -sh .babel.json .config/ .node-clinic-rc .node-gyp/ .node-spawn-wrap-/ .npm* .standard-* .yarn/ .yo-rc-global.json
6.3M	.babel.json
8.0K	.config/
4.0K	.node-clinic-rc
 10M	.node-gyp/
  0B	.node-spawn-wrap-/
1.5M	.npm
4.0K	.npmrc
136K	.standard-cache
504K	.standard-v12-cache
192K	.standard-v14-cache
  0B	.yarn/
4.0K	.yo-rc-global.json

but they get hidden more easily on a mac:

$ du -sh Library/Caches/*
  0B	Library/Caches/JNA
2.3G	Library/Caches/Yarn
845M	Library/Caches/electron
432K	Library/Caches/js-v8flags
348M	Library/Caches/node-gyp
 16K	Library/Caches/pip

^ there's our problem with macos filling up with citgm. Because citgm has no cleanup mode, all of these things are left in place and they just build up until someone decides to clean up. But when they're not obvious they tend to get left alone (I don't think I've ever cleaned Library/Caches on one of these machines tbh).

so, maybe citgm needs to be extended to have a "cleanup" added for each package that gets run through it. Do an rm -rf on some set of directories known to be possibly created when executing tests for that package. It doesn't need to be perfect, it just needs to catch enough of these that we slow the rot down and have a place where we can put new directories that we discover during the process.

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rvagg commented Oct 20, 2019

Removing all of those on that mac machine takes us from:

/dev/disk0s2    49Gi   46Gi  2.5Gi    95% 12250299 646997   95%   /

to:

/dev/disk0s2    49Gi   43Gi  6.0Gi    88% 11336629 1560667   88%   /

our disk resources on mac are tight, so this makes a massive difference.

@richardlau
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Thanks for that.

I think we could make CITGM redirect the caches (almost certainly the node-gyp ones). I'll look at doing that to start with as it'll be a simpler solution than working out what all of the individual modules tests are doing.

CITGM already redirects the temp dir when executing tests for a module and attempts to clean that up.

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rvagg commented Oct 20, 2019

@richardlau for the purpose of our CI machines, it probably wouldn't be terrible to just maintain a list of directories we can run a cleanup on, maybe as a special --cleanup mode when run in CI. It would include these directories because they're always roughly the same. The proliferation of .standard* directories is relatively new, but these others have been around for a while and I can almost do this without looking at what's there. We can also guarantee that removing these directories on these machines won't disrupt other use, they're only touched by citgm.

I'll leave the details to you though, just a thought.

richardlau added a commit to richardlau/citgm that referenced this issue Oct 21, 2019
The tests for some modules write into `os.homedir()` and are not
cleaning up afterwards. This is accumulating over time on our CI
and require periodic manual cleaning.

Redirect the environment variables used by `os.homedir()` into
CITGM's temporary directory for the module being tested, which gets
removed at the end of the test run.

Refs: nodejs/build#1908 (comment)
richardlau added a commit to nodejs/citgm that referenced this issue Oct 22, 2019
The tests for some modules write into `os.homedir()` and are not
cleaning up afterwards. This is accumulating over time on our CI
and require periodic manual cleaning.

Redirect the environment variables used by `os.homedir()` into
CITGM's temporary directory for the module being tested, which gets
removed at the end of the test run.

Refs: nodejs/build#1908 (comment)
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Summary of steps taken:

  • os.homedir() for modules being tested redirected (lib: redirect homedir for modules being tested citgm#755) -- should eliminate the cruft from being written to the home directory
  • Parallelism on AIX reduced from 20 (the number of cpus):
    • capped to -j 5 for building Node.js (mirroring the hardcoded export JOBS=5 from node-test-commit-aix. (Should the JOBS environment variable be set on the AIX hosts by ansible rather than hardcoded in the CI job?)
    • -J parameter to citgm-all replaced on AIX with -j 2 (we got ENOMEM errors with -j 5)
  • added make distclean after make install to clear out the build artifacts before running CITGM (note the job was already removing the node directory used to build Node.js as a post build task)
  • find "$NODE_TEST_DIR" -mtime +3 | xargs rm -rf run just prior to running CITGM to clear out old artifacts from $NODE_TEST_DIR

Kicked off a test run: https://ci.nodejs.org/job/citgm-smoker/2078/

@richardlau
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AIX and macOS now complete and test results look comparable to the other platforms.

(macOS seemed very slow to complete compared to the other platforms -- possibly due to not using ccache as #1956 hasn't been applied to the test macs?)

@rvagg
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rvagg commented Oct 25, 2019

I'm pretty sure #1956 was applied uniformly, or at least I tested that ccache was working across the whole cluster. I'd love for someone else to confirm that ccache is in operation across them all though.

@richardlau
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richardlau commented Oct 25, 2019

@rvagg I'm not sure how I tell if ccache is in operation. If I look at https://ci.nodejs.org/job/citgm-smoker/2078/nodes=osx1011/injectedEnvVars/ the PATH environment variable is /usr/localopt/ccache/libexec:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin -- #1956 implies /usr/localopt/ccache/libexec is the wrong path?

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rvagg commented Oct 25, 2019

yeah, that doesn't look right, localopt is the problem, it should be local/opt, I don't suppose you have time to fish around on those servers? You have access don't you?

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yeah, that doesn't look right, localopt is the problem, it should be local/opt, I don't suppose you have time to fish around on those servers? You have access don't you?

No, I don't. I really should get round to joining the WG 😅.

@rvagg
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rvagg commented Oct 25, 2019

yes, please do

@richardlau richardlau self-assigned this Oct 30, 2019
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Last few CITGM runs have been successful. Will keep an eye out but I think the changes should keep CITGM's disk space usage under control from run-to-run.

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