-
Notifications
You must be signed in to change notification settings - Fork 0
Home
Patrick Douglas edited this page Aug 15, 2023
·
2 revisions
AutoHPC is a set of scripts made to help you to create your own homemade High-Performance Cluster (HPC) at Linux Environment
For an unknown reason AutoHPC is almost fully programed at the classical bash scripting
AutoHPC has the main objective to create a homemade High Performance Cluster Computing system, which you can use for a lot of objectives, but it was mainly for Bioinformatic analysis, such as:
- RNA-Seq assembly
- Gene expression experiments
- Differential Expression analysis
- R statistical procedures and illustrations generation
- Population genetics and structure
- Large data table handling
And a lot more things you can't even imagine :D
- How to run
- BLAST+ in Seqs-Extractor
- SSR analysis using Seqs-Extractor and MISA
- Extracting sequences from any .FASTA file using any TEXT file
- Extracting Trinity Differential Expression transcripts
- Example files of SeqsExtractor
- Frequent asked questions (FAQ) and known bugs
- Third party software that comes with Seqs Extractor
- References
- [DEPRECATED Options]