How to Install

Minimum System Requirements

- Linux Debian based operating system (Linux mint is preferred).
- Windows Linux Subsystem Running on Windows 11 (Tested on Windows 11 Pro for Workstations)
- Internet access is required during installation process

Download AutoHPC repository from GitHub

Procedures for each OS type:

Windows Linux Subsystem on Windows 11

Clone this GitHub repository by clicking here

STOP HERE !!!!!

How to install, uninstall or reinstall:

NOTE: Make sure you have downloaded the latest release of SeqsExtractor

# Linux Mint/Ubuntu

Open a terminal window and type the following commands:

$ sudo -i

$ cd (to folder where you unpack the software files, EXAMPLE "cd /home/jhon/Downloads/seqsextractor/Linux-Debian")

$ chmod +x installer.sh

$ ./installer.sh

# Mac OSX

Open a terminal window and type the following commands:

$ cd (to folder where you unpack the software files, EXAMPLE "cd /home/jhon/Downloads/seqsextractor")

$ chmod +x installer.sh

$ ./installer.sh

You will be asked to choose an option as bellow:

1 To install SeqsExtractor and all required tools
2 To uninstall SeqsExtractor and all required tools

By using option 1 or 3, you agree with the installation of BLAST+ standalone tools (Altschul, et al 1990), SAMTOOLS (Li, et al., 2009) and MISA (Thiel, 2003), which are required to some analyses.