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Fix 990 #1

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wants to merge 185 commits into from
Closed

Fix 990 #1

wants to merge 185 commits into from

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pierre-nedelec
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@pierre-nedelec pierre-nedelec commented Aug 21, 2023 •
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Fix issue yeatmanlab#990

arokem and others added 30 commits January 10, 2023 12:08
@arokem
MAINT: Upgrade pytest as a start to tackling CI errors.
6dda22f
@arokem
Replaces nibabel's deprecated temporary directory with stdlib.
b805636
@arokem
Removes nibabel tempdir, and fixes up testing.
9e1aa15
@arokem
Update pytest markings, based on https://docs.pytest.org/en/stable/ho…
297addf 
…w-to/mark.html
@arokem
The scope of TemporaryDirectory() is limited.
ff741ae 
OTOH, we are not doing any cleanup this way. Maybe we need
to implement our own context manager?
@arokem
Another adaptation to new test usage.
56e68be
@arokem
Changes one more place where this should be referred directly
25bf238
@arokem
MAINT: pep517 => build.
50027c4
@arokem
Merge pull request yeatmanlab#947 from arokem/update_to_build
57c18f0 
MAINT: pep517 => build.
@36000
Merge pull request yeatmanlab#945 from arokem/upgrade_pytest
dffb3da 
MAINT: Upgrade pytest as a start to tackling CI errors.
@arokem
Small documentation fixes, to improve auto-rendering of API docs.
656e3b0
@arokem
Merge pull request yeatmanlab#949 from arokem/small_doc_fixes
afcc50c 
Small documentation fixes, to improve auto-rendering of API docs.
@36000
re-add this max length constraint
fe65934
@36000
update brain mask calculation
97b90a0
@36000
add length test to nightly
5e1ac02
@36000
Merge pull request yeatmanlab#955 from 36000/trk_max_len
aa0634d 
[FIX] Add max length constraint, b0 fix
@36000
1.0.1
7bf8b25
@36000
[ENH] Add GPU accelerated tractography to pyAFQ
4f7c5f3
@36000
try this
b8bc109
@36000
add docs / BFs
ac1cd2a
@36000
Merge pull request yeatmanlab#962 from 36000/gpu_tracking
c1637a8 
[ENH] add gpu tracking to pyAFQ
@qiqiliang @36000
Starting doc overhaul
17dd7cd
@qiqiliang @36000
Move table of contents up in index file
3154027
@qiqiliang @36000
Moved some files
50d2b4c
@qiqiliang @36000
Added grid thing from numpy
2aa64aa
@qiqiliang @36000
Added cards to front page
065e03d
@qiqiliang @36000
Made changes to front page, added icons and clickable buttons
2615a37
@qiqiliang @36000
Redesigned buttons, got rid of some images, need to find a place to p…
bd570c8 
…ut them. Got rid of toctree element on the page (you can still use it in the navbar and buttons.
@qiqiliang @36000
Made two folders in examples folder and sorted out howto examples v. …
fd4b579 
…tutorial examples
@qiqiliang @36000
added sphinx design to setup.cfg
9958ebd
36000 and others added 28 commits June 1, 2023 15:04
@36000
only return whats necessary here
60d1331
@36000
update names to lowercase, add reference
be9fc8e
@36000
typo
186157c
@36000
try different machines for building docs
f6912c7
@36000
this could reduce mem consumption
d29e0b4
@36000
this could reduce mem consumption
6854438
@36000
put back tracking params in example
4cb58f6
@arokem
Merge pull request yeatmanlab#953 from 36000/finding_optics
6cbde8c 
[ENH/FIX] Improvements for finding the Visual Pathway
@36000
[ENH] allow GPU docker file to play nice with singularity
7a0e390
@36000
Merge pull request yeatmanlab#971 from 36000/gpu
0ba5913 
[ENH] allow GPU docker file to play nice with singularity
@36000
[ENH] add CUDA 12 compat to GPU tractography
bea2cb1
@36000
Merge pull request yeatmanlab#972 from 36000/cuda12
6259b19 
[ENH] add CUDA 12 compat to GPU tractography
@36000
[FIX] split GPU pyafq docker builds into differnet actions
9d4ca71
@36000
change name
2c6012d
@36000
attempt to fold all of these into one file
88bbfb4
@36000
Merge pull request yeatmanlab#975 from 36000/fix_cuda_12_pipeline
f867811 
[FIX] split GPU pyafq docker builds into differnet actions
@36000
[FIX] Calculate new curvature metric manually, and as intended
acd2923
@36000
BF
7e1d31a
@36000
Re-work this to use average angle
826a3af
@36000
some fixes to orientation analysis
3e90b4f
@36000
add docs and tests
4f55c51
@36000
Merge pull request yeatmanlab#973 from 36000/curvature_updates
71cd73a 
[ENH] Calculate new curvature metric manually
@36000
[ENH] allow the setting of number of voxels for a seed mask
a916c8d
@36000
[ENH] Some minor fixes here and there
4e7f961
@36000
add export_up_to
c3b2d76
@36000
Merge pull request yeatmanlab#976 from 36000/more_specific_roi_seeding
f70b18d 
[ENH] allow the setting of number of voxels for a seed mask
@36000
Merge pull request yeatmanlab#977 from 36000/minor_fixes
0c4a726 
[ENH] Adds export_up_to, adds some minor fixes here and there
@pierre-nedelec
update pybids requirement
5f5766f
@pierre-nedelec pierre-nedelec deleted the fix-990 branch August 21, 2023 22:31
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4 participants
@pierre-nedelec @arokem @36000 @qiqiliang