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v4.3.0

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@github-actions github-actions released this 11 Mar 19:28
· 701 commits to latest since this release

New features:

  • add sourmash sig grep (#1864)
  • add sourmash sig summarize (#1837, #1863)
  • add --include-db-pattern and --exclude-db-pattern to many commands (#1871)
  • update lca summarize output to output total counts (#1838)

Bug fixes:

  • fix sourmash prefetch to work when db scaled is larger than query scaled (#1870)
  • fix sourmash prefetch for multiple ksizes in database (#1866)
  • allow missing columns in tax CSV files (#1869)
  • fix containment calculation for nodegraphs (#1862)
  • fix tax prepare SQL code for empty/blank taxonomic ranks (#1843)

Cleanup and documentation fixes:

  • clean up 'describe' a little bit, add a test (#1861)
  • add --output-dir as alias for every --outdir (#1817)
  • fix doc titles in command-line.md and update description a bit (#1874)

Developer updates:

  • move greyhound-core into sourmash (#1238)
  • drop Python 3.7, default most of CI to Python 3.10 (#1839)
  • reorganize traits for easier wasm and native compilation (#1836)
  • update asv to newly released version (#1834)
  • pin setuptools < 60 (#1879)