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Commits on Jan 4, 2019

• fix #15

  tiagofilipe12

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  7cec748

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Commits on Nov 6, 2018

• fixed issue with median multiplicity report

  tiagofilipe12

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  032e337

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Commits on Sep 25, 2018

• updated to patlas 1.6.0 release

  tiagofilipe12

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  0638d8a

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Commits on Sep 7, 2018

• fixed issue with import of utils

  tiagofilipe12

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  f3e9f2f

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• removed submodule

  tiagofilipe12

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  480a341

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• fix #14

  tiagofilipe12

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  b1187ed

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Commits on Jul 21, 2018

• updated readme to state where are stored the results of the pipelines

  tiagofilipe12

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  da38b58

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• updated path

  tiagofilipe12

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  8d8558f

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• updated paths to new files for new release 1.5.2

  tiagofilipe12

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  9d86daf

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Commits on Jul 16, 2018

• upadated docker img tag

  tiagofilipe12

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  6d06e40

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Commits on Jul 12, 2018

• added scratch true to bowtie and samtools

  tiagofilipe12

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  40c7edf

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Commits on Jul 4, 2018

• updated bowtie process and images in config

  tiagofilipe12

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  1dcd864

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Commits on Jul 3, 2018

• removed legacy threads param

  tiagofilipe12

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  c69f3b2

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Commits on Jun 19, 2018

• fixed link to databases

  tiagofilipe12

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  400966b

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• updated docker images for pATLASflow

  tiagofilipe12

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  2628222

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Commits on May 29, 2018

• fixed path to new indexes

  tiagofilipe12

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  8cc7dee

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Commits on May 28, 2018

• fixed path to indexes in dockerfile

  tiagofilipe12

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  3693d20

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• updated docker img for mapping

  tiagofilipe12

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  37a7ce2

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• updated docker img

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  77f6240

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Commits on May 17, 2018

• updated templates

  tiagofilipe12

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  d6dfb38

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• updated template

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  9f27c8d

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Commits on May 9, 2018

• fixed path to release

  tiagofilipe12

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  0b85227

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• updated json with lengths of plasmids in db

  tiagofilipe12

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  777db61

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Commits on May 8, 2018

• fixed bowtie2 index name

  tiagofilipe12

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  4411828

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• updated docker container tag in nextflow config

  tiagofilipe12

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  6b2d8ad

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• updated link to database in dockerfile

  tiagofilipe12

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  a4d3ab0

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Commits on Apr 13, 2018

• refactored consensusChannel

  tiagofilipe12

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  74dd595

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Commits on Apr 9, 2018

• added publish dir "results" to all the json outputs

  tiagofilipe12

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  09918d5

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Commits on Apr 4, 2018

• updated templates

  tiagofilipe12

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  d541fb9

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• changed merge operator to join

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  e0ceabf

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Commits on Apr 3, 2018

• updated templates

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  d1e65af

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• added shared_hashes param for mash dist

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  f43e8c4

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Commits on Mar 28, 2018

• updated slurm params

  tiagofilipe12

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  c7cacdb

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• removed scratch and patched mapping output json

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  4dc42fe

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Commits on Mar 27, 2018

• updated image version

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  95828cf

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