#
bioformats
Here are 7 public repositories matching this topic...
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
workflow
pipeline
nextflow
image-processing
spatial
stitching
registration
segmentation
image-analysis
single-cell
microscopy
ome-tiff
nf-core
tma
bioformats
multiplexed-imaging
-
Updated
Aug 19, 2024 - Nextflow
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
-
Updated
Dec 9, 2021 - Python
(deprecated) meta-package to import bioformats_jar from scyjava
-
Updated
May 27, 2022 - Python
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
-
Updated
Jun 24, 2024 - Python
-
Updated
Jun 27, 2022 - Python
Improve this page
Add a description, image, and links to the bioformats topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the bioformats topic, visit your repo's landing page and select "manage topics."