Read and write TIFF files
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Dec 13, 2024 - Python
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ome-tiff
Here are 16 public repositories matching this topic...
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
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Dec 9, 2024 - JavaScript
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
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Jul 11, 2023 - R
I/O operations for OME-TIFF files in Julia
julia julia-language image-processing image-analysis ome-tiff ome-files image-analysis-workflows micromanager
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Nov 1, 2024 - Julia
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
workflow image nextflow conversion file-format ome-tiff ome zarr bioimage ome-zarr ome-zarr-converter
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Nov 3, 2024 - Python
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
image-processing proteomics phenotyping multichannel single-cell spatial-data-analysis ome-tiff cell-segmentation whole-slide-imaging proteomics-data-analysis digital-slide-archive cell-cell-interaction multiplexed-imaging multiplexed-imaging-analysis mibiscope spatial-biology
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Feb 29, 2024 - JavaScript
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
workflow pipeline nextflow image-processing spatial stitching registration segmentation image-analysis single-cell microscopy ome-tiff nf-core tma bioformats multiplexed-imaging
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Dec 20, 2024 - Nextflow
OME Files is a C++ library for reading and writing data using the open and standard OME-TIFF file format using the OME data model
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Jun 26, 2019 - C++
Feature based image registration for immunofluorescence images
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May 28, 2021 - Python
Supplementary information associated with Besson et al. (2019) ECDP 2019
docker bio-formats omero ome-tiff digital-pathology proceedings whole-slide-imaging supplemental-materials qupath
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Jan 7, 2021 - Python
pipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath
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Mar 1, 2024 - Jupyter Notebook
A benchmark to compare data retrieval performance for OME-TIFF and Zarr using different tile sizes and HTTP protocol versions.
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Dec 4, 2020 - JavaScript
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