A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation
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Aug 2, 2018 - Python
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biomedical-data-science
Here are 36 public repositories matching this topic...
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
machine-learning computational-biology pytorch uncertainty mri unet microscopy uncertainty-quantification uncertainty-estimation biomedical-image-processing computational-imaging biomedical-data-science quantile-regression image-to-image-translation
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Feb 23, 2023 - Python
Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
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Dec 20, 2024 - Python
Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches
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Apr 30, 2018 - Python
Knee Osteoarthritis Analysis with X-ray Images using CNN
deep-learning biomedical-data-science yolov2 x-ray-images cnn-classification grading-system knee-joints knee-osteoarthritis-analysis kl-grading
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Feb 9, 2022 - Python
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
visualization workflow bioinformatics gene-sets rna-seq snakemake pipeline chip-seq atac-seq gene-set-enrichment enrichment-analysis genomic-regions biomedical-data-science motif-enrichment-analysis
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Dec 20, 2024 - Python
A Python library for biomedical statistical shape and appearance modelling.
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Jun 19, 2024 - Python
Unsupervised domain adaptation method for relation extraction
nlp machine-learning natural-language-processing bioinformatics nlp-machine-learning relation-extraction biomedical-data-science
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Jul 16, 2018 - Python
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
visualization python workflow bioinformatics rna-seq snakemake pipeline scrna-seq atac-seq genome-browser genomic-regions biomedical-data-science genome-track
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Dec 20, 2024 - Python
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
visualization workflow bioinformatics rna-seq snakemake integration pipeline ngs dimensionality-reduction chip-seq atac-seq normalization biomedical-data-science batch-effect count-matrix
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Dec 20, 2024 - Python
Analysis code for knowledge discovery project
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Sep 25, 2018 - Python
Deep learning model of depression detection from activity sensor data
deep-learning tensorflow signal-processing keras cnn depression mental-health depressed biomedical-data-science mental-health-awareness mental-disorder
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Dec 17, 2021 - Python
Toolkit for analyzing physiologic data collected via Biopac AcqKnowledge software.
data-acquisition research-data-management biomedical-engineering physiology health-informatics biomedical-data-science biopac
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Jul 6, 2023 - Python
Biomedical Feature Selection for Machine Learning Models
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May 14, 2021 - Python
A text summarization framework to identify major opinions from healthcare text
text-mining text-classification biomedical-informatics nlp-machine-learning health-informatics biomedical-data-science
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Mar 26, 2021 - Python
NLP Term Project for Autumn 2019. Named Entity Recognition in Biomedical Corpus.
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Dec 3, 2019 - Python
analysis eeg eeg-signals coherence eeg-data biomedical-engineering biomedical-data-science coherence-function
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Dec 24, 2017 - Python
Named Entity Recognition using BERT
machine-learning natural-language-processing bioinformatics deeplearning ner bert biomedical-data-science biomedical-text-mining jnlpba biomedical-named-entity-recognition
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Nov 15, 2021 - Python
Draw periodogram of real EEG data
analysis eeg eeg-signals eeg-data periodogram biomedical-engineering biosignals eeg-analysis biomedical-data-science
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Dec 24, 2017 - Python
EEG spectrum mean of 84 records
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Dec 24, 2017 - Python
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