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biomedical-data-science

Here are 13 public repositories matching this topic...

epigen / dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

visualization workflow bioinformatics rna-seq snakemake r statistics scrna-seq chip-seq atac-seq limma biomedical-data-science differential-expression-analysis volcano-plot limma-voom limma-trend

Updated Dec 20, 2024
R

epigen / scrnaseq_processing_seurat

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

visualization workflow bioinformatics snakemake scrna-seq single-cell 10xgenomics biomedical-data-science cite-seq snrna-seq sccrispr-seq

Updated Dec 20, 2024
R

epigen / dea_seurat

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

visualization workflow bioinformatics snakemake scrna-seq single-cell biomedical-data-science differential-expression-analysis volcano-plot snrna-seq

Updated Dec 20, 2024
R

epigen / mixscape_seurat

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

visualization workflow bioinformatics snakemake scrna-seq single-cell biomedical-data-science perturbation-analysis snrna-seq sccrispr-seq

Updated Dec 20, 2024
R

i6092467 / pediatric-appendicitis-ml

Using ML to predict the diagnosis, management, and severity of pediatric appendicitis

machine-learning classification medical-informatics biomedical-data-science decision-support-systems

Updated Feb 14, 2023
R

EHRsourceVariability

carsaesi / EHRsourceVariability

Measuring and visualizing biomedical data variability/heterogeneity across data sources

biomedical-informatics data-quality electronic-health-records biomedical-data-science heterogeneity frailty variability biomedical-data dataset-shifts

Updated May 21, 2019
R

a-r-j / DrugTranslatoR

R package for translating between drug identifiers using the Chemical Translation Service (CTS)

r chemistry cheminformatics chemical biomedical-informatics drug-discovery drug-repurposing r-package identifiers biomedical-data-science drug-development chemical-translation-service chemical-identifiers

Updated Jan 11, 2023
R

akatrib / sys-bio

Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings

bioinformatics systems-biology bioinformatics-pipeline network-analysis pathway-analysis enrichment-analysis protein-protein-interaction co-expression biomedical-data-science omics-data-integration pathway-enrichment-analysis

Updated Nov 19, 2020
R

FBCanalysis

MrMaximumMax / FBCanalysis

Package to develop and evaluate time series data models based on fluctuation based clustering and Earth Mover's Distances

phenotyping unsupervised-learning fluctuation-analysis time-series-clustering biomedical-data-science medical-data-management asthmatics medical-data-analysis endotyping

Updated Jun 22, 2022
R

pwatrick / ddiwas

bioinformatics computational-biology biomedical-informatics electronic-health-record biomedical-data-science drug-drug-interaction

Updated Aug 7, 2024
R

aprabaswara / Risk-Factors-for-Leptospirosis-in-Kenyan-Pastoral-Landscape

A Study of the Risk Factors for Leptospirosis Infection in Kenya.

biostatistics logistic-regression odds-ratio biomedical-data-science generalized-linear-mixed-models prevalence leptospirosis-risk-factors

Updated Aug 23, 2022
R

ydavidchen / hrd_tnbc

Bioinformatic, statistical & ML analysis of Homologous Recombination Deficiency in triple-negative breast cancer

biostatistics bioinformatics-analysis biomedical-data-science applied-machine-learning epigenetics-data

Updated Aug 16, 2024
R

ydavidchen / lgg_multiclass

Multiclass prediction of lower-grade glioma subtypes via gene promoter CpG island profiles

biomedical-data-science applied-machine-learning

Updated Feb 21, 2024
R

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