Rare variant test software for next generation sequencing data
Efficient variant-call data storage and retrieval library using the TileDB storage library.
📊 Identify cell types and pathways affected by genetic risk loci.
Visual Machine Learning of Genome-Phenome Associations
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
Tool for integrative gene-based association analysis using GWAS summary stats
Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
Scalable Implementation of generalized mixed models using GDS files in Phenome-Wide Association Studies
GWAS third-level epistatic search tool for cluster architectures
Compute imputed variant exclusion lists based on https://doi.org/10.1002%2Fgepi.21603
Use reference genetic map to interpolate genetic position for a query set of variants
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
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