Custom Analysis Part 8

Resources

More on BactMAP functions used in this Tutorial

1. bactKymo()
2. perc_Division()
3. Overview of Import Functions
4. Data structures: raw images and mesh

Tools, utilities & Further reading

1. Hierarchical Clustering with TSclust
2. Using ggplot2
3. Saving Data
4. Working with larger datasets

References

Montero, P., & Vilar, J. (2014). TSclust: An R Package for Time Series Clustering. Journal of Statistical Software, 62(1), 1-43

Paintdakhi, A., Parry, B., Campos, M., Irnov, I., Elf, J., Surovtsev, I., & Jacobs‐Wagner, C. (2016). Oufti: an integrated software package for high‐accuracy, high‐throughput quantitative microscopy analysis. Molecular microbiology, 99(4), 767-777.

Stylianidou, S., Brennan, C., Nissen, S. B., Kuwada, N. J., & Wiggins, P. A. (2016). SuperSegger: robust image segmentation, analysis and lineage tracking of bacterial cells. Molecular microbiology, 102(4), 690-700.

Caldas, V. E., Punter, C. M., Ghodke, H., Robinson, A., & van Oijen, A. M. (2015). iSBatch: a batch-processing platform for data analysis and exploration of live-cell single-molecule microscopy images and other hierarchical datasets. Molecular BioSystems, 11(10), 2699-2708.

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⬅️ Custom Analysis Part 7: Visualizing Groups	▪️ ◾ ▪️	Tutorials Overview ➡️