0.2.0

What's Changed

• version 0.0.1-alpha by @ubyndr in #4
• Add method to query cl slims by @ubyndr in #8
• Support co annotation analysis by @ubyndr in #9
• Jupyter notebook snippets needed by @ubyndr in #15
• Support option of choosing only normal cells for analysis by @ubyndr in #16
• Co annotation analysis - enrichment extension [Merge after #16] by @ubyndr in #22
• Update walkthrough.ipynb by @dosumis in #28
• Add function to filter anndata matrix by cell type by @ubyndr in #25
• Generate graphs using cell sets as unifying concept by @ubyndr in #24
• Support basic metaschema for flagging cell type fields by @ubyndr in #33
• Update README.md by @dosumis in #40
• Add wrapper object that initialises and contains enricher and analyzer objects by @ubyndr in #34
• Updated toml and lock files by @ubyndr in #42
• Create ROADMAP.md by @dosumis in #43
• Pygraphviz fix by @ubyndr in #44
• Added 'Detailed installation guide for pygraphviz issue' section by @ubyndr in #48
• Provide term names for contextual enrichment terms by @ubyndr in #45
• Extend graph visualization to give more flexibility in filtering by @ubyndr in #47
• Documentation automation with Sphinx by @ubyndr in #49
• Minor bug fixes and improvements manual testing notes by @ubyndr in #51
• Test case implementation by @ubyndr in #52
• Documentation fix by @ubyndr in #53
• Documentation fix by @ubyndr in #54
• Changes for MVP-4632 by @ubyndr in #56
• Version update 0.1.7 by @ubyndr in #58
• Transitive reduction patch by @ubyndr in #60
• Updated version to 0.1.9 by @ubyndr in #61
• Refactored enrichment method check by @ubyndr in #62
• Added remove_special_characters method by @ubyndr in #63
• Cl annotation patch by @ubyndr in #66
• Updated create_cell_type_dict docstring by @ubyndr in #68
• Fix for amazing rendering at create_cell_type_dict docstring by @ubyndr in #69
• Dataset object populated with properties from h5ad uns by @ubyndr in #70
• Drop empty values in seed_dict by @anitacaron in #71
• Unknown key-value pair handling has been added by @ubyndr in #72
• Add method to track cell contribution percentages by cxg obs fields by @ubyndr in #73
• Doi patch for citation field in uns by @ubyndr in #74
• Remove special characters patch by @ubyndr in #75
• Refactored CURIE generation logic for annotated_target by @ubyndr in #76
• Refactored seed_dict assignment logic by @ubyndr in #77
• Metadata percentage nodes patch for NaN values by @ubyndr in #78
• Define EFO prefix to be used in development_stage field by @anitacaron in #80
• Dataset IRIs are based on CxG dataset UUID by @ubyndr in #82
• Replace anndataread with anndataread h5ad due to 2024 deprecation by @ubyndr in #84
• Add GitHub Action for Automatic PyPI Publishing by @ubyndr in #86
• Refactor to support separate cell cluster nodes by @ubyndr in #88

New Contributors

• @dosumis made their first contribution in #28
• @anitacaron made their first contribution in #71

Full Changelog: https://github.com/INCATools/pandasaurus_cxg/commits/0.2.0