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Referenced software
Rayan Chikhi edited this page Nov 23, 2021
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18 revisions
| Software | Version |
|---|---|
| bcftools | v1.7 |
| Bowtie2 | v2.4.1 |
| BWA | v0.7.17 |
| CD-HIT | v4.8.1 |
| CheckV | v0.6.0 |
| coronaSPAdes | v3.15.3 |
| D3.js | 5.16.0 |
| DARTH | maul |
| DIAMOND | v2.0.8 |
| Dustmasker | ncbi-blast:2.10.0 |
| EPA-ng | v0.3.7 |
| Gappa | v0.6.1 |
| getorf | EMBOSS:6.6.0.0 |
| Grafana | 8.2.5 |
| HMMER3 | v3.3 |
| Infernal | v1.1.4 |
| IQTREE | v.1.6.6 |
| MAFFT | v.7.407 |
| MEGAHIT | v1.2.9 |
| ModelTest-NG | v0.1.3 |
| MUSCLE | v3.8 |
| nidhoggr | v0.1 |
| Palmscan | v1.0.0 |
| ParGenes | v1.1.2 |
| PostgreSQL | 10.14 |
| Prodigal | v2.6.3 |
| Prometheus | 2.5.0 |
| RAxML-NG | v0.9.0 |
| React | 16.13.1 |
| rnaviralSPAdes | v3.15.3 |
| SAMtools | v1.7 |
| seqkit | v0.12.0 |
| seqtk | github@7c04ce7 |
| Serratus | v0.3.0 |
| snakemake | v6.6.0 |
| TrimAL | v1.14 |
| UBLAST | usearch v11.0.667 |
| UCHIME2 | usearch v8.0.1623 |
| USEARCH | v11.0.667 |
| VADR | 1.1 |
| Virsorter2 | v2.1 |