ref_protref5

protref5

Reference panproteome associated with the psummary/ and pro/ files on lovelywater2. Also referred to "pilot search" in the main Serratus manuscript.

• Sequence Files: s3://lovelywater2/seq/protref5/
• Make notebook entry

Notes:

Nido RdRp for sumbler

RdRp OTU sequences at 97% for GenBank Nido plus Serratus assemblies including Epsy, curated by RCE.

Selected families with vertebrate hosts from protref_v3

Arenaviridae Arteriviridae Caliciviridae Coronaviridae Euroniviridae Filoviridae Flaviviridae Hepadnaviridae Hepeviridae Hugephage Matonaviridae Medioniviridae Mesoniviridae Mononiviridae Roniviridae Tobaniviridae

Clustered at 90% id. Sequences matching RdRp OTUs with 60%+ id discarded.

Deltavirus

Provided by AB.

Dicistroviridae

Provided by AB.

Huge phages

Nt sequences for capsid and terminase provided by Basem. Translated to a.a. and clustered at 97% id.

Satellite viruses

Albetovirus, Aumaivirus, Papanivirus, Virtovirus, Macronovirus.

Proteins from nr database with this query:

Albetovirus[Primary Organism] or Aumaivirus[Primary Organism] or Papanivirus[Primary Organism] or Virtovirus[Primary Organism] or Macronovirus[Primary Organism]

Clustered at 97% identity.