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Update mtp tables qc checks to include expression tpm tables #288

Merged
merged 30 commits into from
Dec 1, 2022
Merged

Update mtp tables qc checks to include expression tpm tables #288

merged 30 commits into from
Dec 1, 2022

Commits on Nov 3, 2022

  1. change the name form mutation-frequencies-table-checks to mtp-tables-… 

    …qc-checks
    @adilahiri
    adilahiri committed Nov 3, 2022
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  2. add long_n_tpm_mean_sd_quantile_gene_wise_zscore.tsv.gz and long_n_t… 

    …pm_mean_sd_quantile_group_wise_zscore.tsv.gz to current
    @adilahiri
    adilahiri committed Nov 3, 2022
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  3. Adding the v10 files in the previous folder

    @adilahiri
    adilahiri committed Nov 3, 2022
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  4. Reading the current and previous files

    @adilahiri
    adilahiri committed Nov 3, 2022
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Commits on Nov 4, 2022

  1. Change the directory

    @adilahiri
    adilahiri committed Nov 4, 2022
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  2. adding the function

    @adilahiri
    adilahiri committed Nov 4, 2022
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Commits on Nov 7, 2022

  1. Adding number of samples

    @adilahiri
    adilahiri committed Nov 7, 2022
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  2. Add all cancer cohort

    @adilahiri
    adilahiri committed Nov 7, 2022
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  3. column changes

    @adilahiri
    adilahiri committed Nov 7, 2022
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  4. Add mondo changes, ensmbl changes

    @adilahiri
    adilahiri committed Nov 7, 2022
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  5. Remove the temp result files

    @adilahiri
    adilahiri committed Nov 7, 2022
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  6. Adding a RMD file for running bash script

    @adilahiri
    adilahiri committed Nov 7, 2022
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Commits on Nov 8, 2022

  1. Cleaned the bash file and added the function rmd file

    @adilahiri
    adilahiri committed Nov 8, 2022
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  2. Fixing the typo of current_tables vs current_table

    @adilahiri
    adilahiri committed Nov 8, 2022
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  3. Run after correcting the typo

    @adilahiri
    adilahiri committed Nov 8, 2022
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  4. remove some of the intermediate coding files

    @adilahiri
    adilahiri committed Nov 8, 2022
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Commits on Nov 9, 2022

  1. updating the readme

    @adilahiri
    adilahiri committed Nov 9, 2022
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  2. Update the readme intro

    @adilahiri
    adilahiri committed Nov 9, 2022
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  3. Merge branch 'dev' into HEAD

    @adilahiri
    adilahiri committed Nov 9, 2022
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  4. Update the branch

    @adilahiri
    adilahiri committed Nov 9, 2022
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  5. delete v10 files, to add the new files provided

    @adilahiri
    adilahiri committed Nov 9, 2022
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  6. adding the v10 files from the link

    @adilahiri
    adilahiri committed Nov 9, 2022
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  7. Run after v10 files

    @adilahiri
    adilahiri committed Nov 9, 2022
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  8. Remove the readme html

    @adilahiri
    adilahiri committed Nov 9, 2022
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  9. Remove the script 2 html and rerun

    @adilahiri
    adilahiri committed Nov 9, 2022
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Commits on Nov 11, 2022

  1. Updating the readme

    @adilahiri
    adilahiri committed Nov 11, 2022
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  2. Update readme header

    @adilahiri
    adilahiri committed Nov 11, 2022
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Commits on Dec 1, 2022

  1. review updates

    @ewafula
    ewafula committed Dec 1, 2022
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  2. review updates

    @ewafula
    ewafula committed Dec 1, 2022
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  3. Merge branch 'dev' into update-mtp-tables-qc-checks

    @ewafula
    ewafula authored Dec 1, 2022
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