v12 post data release analyses #340
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This was referenced Mar 14, 2023
Updated efo-mondo module to use v12 prefill
…penTargets/OpenPedCan-analysis into v12-gene_match_update
Updated input files for gene_match ran the module
…mat-table-utils update annotation mygene and refseq datasets
ewafula
changed the title
This was referenced Mar 22, 2023
Updated final codes per discussion on OPC Issue 526
v12 cnv and fusion frequencies
v12 snv-frequencies
v12 rnaseq expression summary stats
…bles Generate mtp tables
v12 methylation-summary
v12-filter-mtp tables
jharenza
approved these changes
May 2, 2023
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Purpose/implementation Section
What scientific question is your analysis addressing?
Update data download script -
download-data.shWhat was your approach?
Changed script to download v12 data instead of v11 data
What GitHub issue does your pull request address?
NA
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
check of script download v12 data from s3 bucket v12 folder
Is there anything that you want to discuss further?
NA
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Yes
Results
What types of results are included (e.g., table, figure)?
script
What is your summary of the results?
update script
Reproducibility Checklist
Documentation Checklist
READMEand it is up to date.analyses/README.mdand the entry is up to date.