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Update Develop-ref after #1794 #1815

Merged
merged 597 commits into from
Sep 19, 2022
Merged

Update Develop-ref after #1794 #1815

merged 597 commits into from
Sep 19, 2022
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Commits on Feb 9, 2022

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Commits on Feb 10, 2022

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  2. replace logic to update input data volumes with call to dtcenter/metp…

    …lus-action-data-update action
    georgemccabe committed Feb 10, 2022
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Commits on Feb 11, 2022

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Commits on Feb 15, 2022

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  2. Added fcst_file_type to two wrappers (#1437)

    Co-authored-by: Hank Fisher <fisherh@seneca.rap.ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    3 people authored Feb 15, 2022
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Commits on Feb 16, 2022

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Commits on Feb 17, 2022

  1. Updated METplotpy base env var to preemptively match changes from PR d…

    …tcenter/METplotpy#197. Once that PR is merged into develop, a test workflow will run that should fix this issue.
    georgemccabe committed Feb 17, 2022
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  3. update the instructions for updating test input data to ensure volume…

    …_mount_directories file is updated in the upcoming version directory, i.e. v4.1, so that the Docker data volumes from the release will be created properly
    georgemccabe committed Feb 17, 2022
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  4. removed duplicate script

    georgemccabe committed Feb 17, 2022
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  6. added logic to skip files that are temporary copies of tar files that…

    … should not be added to new version directory
    georgemccabe committed Feb 17, 2022
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  7. updated release guide instructions for creating METplus data director…

    …y for next development cycle
    georgemccabe committed Feb 17, 2022
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  8. Feature 911 tc trackint (#1439)

    Co-authored-by: Mrinal Biswas <biswas@seneca.rap.ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    3 people authored Feb 17, 2022
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Commits on Feb 18, 2022

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Commits on Feb 19, 2022

  1. Feature 626 fix hovmoeller documentation (#1444)

    * Update UserScript_obsPrecip_obsOnly_Hovmoeller.py
    
    replace hovmoeller_diagram.conf with UserScript_obsPrecip_obsOnly_Hovmoeller.conf
    
    * Update UserScript_obsPrecip_obsOnly_Hovmoeller.py
    
    Removed a typo: UserScript This uses data from...
    
    Now: This uses data from...
    
    * Update UserScript_obsPrecip_obsOnly_Hovmoeller.py
    bikegeek authored Feb 19, 2022
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Commits on Feb 22, 2022

  1. Modified the PR template to add review of the source issue metadata c…

    …i-skip-all
    Julie Prestopnik committed Feb 22, 2022
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Commits on Feb 23, 2022

  1. feature_1403_python_components_table (#1446)

    * creating new METplus Components Python Requirements
    
    * adding a return to test
    
    * testing use case links
    
    * testing use case links #2
    
    * testing use case links #3
    
    * testing use case links #4
    
    * Filling in some use cases
    
    * fixing indentation #1403
    
    * fixing indentation #1403 take 2
    
    * fixing indentation #1403 take 3
    
    * cleaning up anything after # in the links #1403
    
    * entries thru D #1403
    
    * entries thru H #1403
    
    * fixing indents #1403
    
    * fixing indents #1403 take 2
    
    * fixing web name #1403
    
    * entries thru L #1403
    
    * entry matplotlib #1403
    
    * entry matplotlib #1403 marking duplicate names
    
    * entry metcalcpy #1403
    
    * entry metcalcpy fix indents #1403
    
    * entry matplotlib #1403 fixing duplicate names
    
    * entry metplotpy #1403
    
    * entry metplotpy #1403 marking duplicate names
    
    * entry metplotpy #1403 fixing
    
    * entry thru ps #1403
    
    * double names #1403
    
    * character fix #1403
    
    * adding in missing links #1403
    
    * thru pyproj #1403
    
    * problem with line 353 #1403
    
    * thru pyproj #1403 typos
    
    * more duplicate names #1403
    
    * line break #1403
    
    * loose ends #1403
    
    * adding >= to some of the versions #1403
    
    * adding name to the Use Cases to avoid duplicate naming issues TEST #1403
    
    * adding name to the Use Cases to avoid duplicate naming issues thru pyproj #1403
    
    * adding thru pyresample #1403
    
    * fixing pyresample typo #1403
    
    * adding thru  scikit-image #1403
    
    * fixing line breaks#1403
    
    * web links thru  scikit-learn #1403
    
    * web links thru scipy #1403
    
    * web links thru sklearn #1403
    
    * Duplicate web names. temp. fix #1403
    
    * Duplicate web names fixed #1403
    
    * Duplicate web names fixing #3 #1403
    
    * Duplicate web names fixing #4 #1403
    
    * Duplicate web names fixing #5 #1403
    
    * table end #1403
    
    * table loose ends #1403
    
    * Removed unnecessary comma
    
    * table loose ends after pull request #1403
    
    * Minor modifications to METplus Component column
    
    * Changed description of pyproj
    
    * Added link for last referenced use case
    
    * Attempting to fix doc warning
    
    Co-authored-by: jprestop <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Feb 23, 2022
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Commits on Feb 24, 2022

  1. Feature 1318 usecase aviso (#1440)

    * Correct small typo.
    
    * Update pull_request_template.md
    
    * Added files for ReadTheDocs (#864)
    
    * Updated documentation links for ReadtheDocs
    
    * Update pull_request_template.md
    
    Added entry for completion date for pull request review.
    
    * Adding python embedding script to read AVISO, RTOFS, HYCOM and OSTIA data
    
    * Updated the script - working but only RMSE values match
    
    * Adding documentation for the AVISO case
    
    * Adding a conf file for the AVISO case
    
    * Updates to the codel to include model3, obs, climo3 but also has many extra print statements, netcdf output files which needs to be cleaned
    
    * Cleaning up the conf file and adding SAL1L2 to get the model_climo sdev and obs_climo sdev
    
    * Updating the file to fix the standard names and add the model3, climo3 and obs3
    
    * Updating the file to fix the standard names and add the model3, climo3 and obs3
    
    * Adding an image to the use case. Image Courtesy: EMC/NOAA website
    
    * added to use case list
    
    * updated case description
    
    * removed merge issues
    
    * caught second docs issue
    
    * removed other doc merge issues, turned off auto test
    
    * more merge comments sneaking in
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    Co-authored-by: jprestop <jpresto@ucar.edu>
    Co-authored-by: Mrinal Biswas <biswas@ucar.edu>
    4 people authored Feb 24, 2022
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Commits on Feb 25, 2022

  1. Merge branch 'develop-ref' into develop

    Julie Prestopnik committed Feb 25, 2022
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Commits on Feb 26, 2022

  1. Revert "Feature 1318 usecase aviso (#1440)" (#1459)

    This reverts commit d3021de.
    j-opatz authored Feb 26, 2022
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  2. Merge branch 'develop-ref' into develop

    reverting the last use case
    j-opatz committed Feb 26, 2022
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Commits on Mar 1, 2022

  1. Feature 1449 v4.1.0 beta6 (#1461)

    * Per #1449, updated version as specified in the Release Guide
    
    * Per #1449, updated release notes
    
    * Updated release date for beta6 release
    
    Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
    jprestop and Julie Prestopnik authored Mar 1, 2022
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Commits on Mar 3, 2022

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  2. Feature 1318 usecase aviso attempt 2 (#1473)

    Co-authored-by: johnhg <johnhg@ucar.edu>
    Co-authored-by: jprestop <jpresto@ucar.edu>
    Co-authored-by: Mrinal Biswas <biswas@ucar.edu>
    Co-authored-by: j-opatz <jopatz@ucar.edu>
    5 people authored Mar 3, 2022
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Commits on Mar 4, 2022

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  5. Revert "fixed bug with replacing wildcard characters with 'all' in ou…

    …tput file paths"
    
    This reverts commit c11711e.
    georgemccabe committed Mar 4, 2022
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Commits on Mar 7, 2022

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  5. added logic to add quotes around grid value if they are not set in co…

    …nf variable value, moved error check for unset grid to init step, ci-run-all-diff
    georgemccabe committed Mar 7, 2022
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Commits on Mar 8, 2022

  1. added build arg to override MET DockerHub repository so development v…

    …ersion tests can use dtcenter/met-dev:develop
    georgemccabe committed Mar 8, 2022
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  3. run diff logic for push events to develop and main_v* branches so we …

    …can catch if changes to external repositories caused differences in the output
    georgemccabe committed Mar 8, 2022
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  4. do not run diff logic on main_v* and develop branch push events -- di…

    …ff logic is already running when external repository triggers workflow, which is what we need to test with the diff logic
    georgemccabe committed Mar 8, 2022
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  5. Added description for Use Cases

    Julie Prestopnik committed Mar 8, 2022
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  6. updated script to set up new release input data directories -- use re…

    …al path for all symbolic links for consistency, added usage statement
    georgemccabe committed Mar 8, 2022
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  7. changed logic to error if new version directory to create already exi…

    …sts at all -- previous logic only errors if directory is not empty
    georgemccabe committed Mar 8, 2022
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  9. Changed all filename template tags for datetime objects (init/valid/d…

    …a_init/etc.) to use %H instead of %2H. We discovered that Python 3.6.8 interprets %2H as the same as %H (correctly substituting the hour), however Python 3.8.8 interprets %2H as 2H. The number in between the % and letter is not supported by strftime so it is not valid for these datetime values. The logic to zero-pad using this notation was written in the METplus string substitution logic and only applies to lead and level template tags. ci-run-all-diff
    georgemccabe committed Mar 8, 2022
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  10. feature 1274 TCGen use case using -shape/-genesis (#1492)

    Co-authored-by: Kathryn Newman <knewman@seneca.rap.ucar.edu>
    Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
    3 people authored Mar 8, 2022
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Commits on Mar 9, 2022

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  3. Feature 1403 python components table (#1497)

    Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
    Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
    3 people authored Mar 9, 2022
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  12. Fixing spacing #1049

    lisagoodrich committed Mar 9, 2022
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Commits on Mar 10, 2022

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Commits on Mar 11, 2022

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  3. feature 1443 document probabilistic field settings (#1508)

    Co-authored-by: johnhg <johnhg@ucar.edu>
    georgemccabe and JohnHalleyGotway authored Mar 11, 2022
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Commits on Mar 14, 2022

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  3. updated release guide to reflect updated process to trigger reference…

    … branch GHA workflow for an official release
    georgemccabe committed Mar 14, 2022
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Commits on Mar 15, 2022

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Commits on Mar 17, 2022

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Commits on Mar 30, 2022

  1. set MET docker repo to dtcenter/met if forcing a specific MET tag to …

    …use since that is where the stable release versions are stored on DockerHub
    georgemccabe committed Mar 30, 2022
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  2. pass variable to tell docker build script that an external workflow t…

    …riggered the run and use -lite if so to ensure that MET docker image that was created by the triggering MET workflow is used
    georgemccabe committed Mar 30, 2022
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Commits on Apr 1, 2022

  1. Feature 1399 usecase cable (#1538)

    * Adding initial code to read AOML Cable Transport and RTOFS cable transport variables
    
    * Updating the conf file (no stat analysis yet) and updates to the read file
    
    * Updating the conf file to add STAT_ANALYSIS
    
    * Updates to the code- adding stats
    
    * Updated code--runs now but needs to follow User Script conventions
    
    * Changed directory name based on MET conventions
    
    * Updating the read file and adding a conf file
    
    * Added logic to count the number of directories in the RTOFS dir
    
    * Updated to run with UserScript conf
    
    * update version for official release
    
    * Adding a yaml file to specify start_date
    
    * Added the yaml file and cleaned up the conf file
    
    * Added logic to read the yaml file, cleaned up the script
    
    * Updating the confile to add output dir, input template and clean up
    
    * Removing yaml, getting vDate from conf file, adding output file
    
    * Adding the doc file for the cable use case
    
    * Adding image courtesy NOAA
    
    * Adding more documentation
    
    * Adding more info
    
    * Updated docs
    
    * Correcting the python embedding script
    
    * Updating to see if the error goes away..no clue
    
    * Fixing the doc error
    
    * modifed docs, testing
    
    * updated permissions for script
    
    * turned off always testing
    
    * Updated version number
    
    * Update use_case_groups.json
    
    * Removed erroneous file
    
    * Apply suggestions from code review
    
    * Update .github/parm/use_case_groups.json
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update docs/use_cases/model_applications/marine_and_cryosphere/UserScript_fcstRTOFS_obsAOML_calcTransport.py
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update docs/use_cases/model_applications/marine_and_cryosphere/UserScript_fcstRTOFS_obsAOML_calcTransport.py
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update docs/use_cases/model_applications/marine_and_cryosphere/UserScript_fcstRTOFS_obsAOML_calcTransport.py
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    Co-authored-by: Mrinal Biswas <biswas@ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    3 people authored Apr 1, 2022
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Commits on Apr 4, 2022

  1. Update UserScript_fcstGFS_obsERA_WeatherRegime.conf

    Fixed a title typo
    CPKalb authored Apr 4, 2022
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Commits on Apr 7, 2022

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Commits on Apr 8, 2022

  1. Feature 770 3rd person (#1564)

    * changing from 2nd to 3rd person and fixing some spacing #770
    
    * missed we and corrected #770
    
    * typos, spacing etc #770
    
    * spelling, italics and bolding #770
    
    * removing you changing to 3rd person #770
    
    * changing to 3rd person #770
    
    * 3rd person already done.  Fixing formatting, typos etc.  #770
    
    * 3rd person already done.  Fixing formatting  #770
    
    * changing to 3rd person, fixing typos, spacing, etc. #770
    
    * changing to 3rd person, fixing typos, grammar and punctuation. #770
    
    * google doc corrections. #770
    
    * clean up #770
    
    * removing |  #770
    
    * typo #770
    
    * Fixing TOC and coding block #770
    
    * fixing note #770
    
    * one 3rd person fix.  Updating bolding and italics for file names and directories #770
    
    * Modified Python Code Analyis Tools
    
    * Modified Python Code Analyis Tools
    
    * Removed link for PROCESS_LIST. If we can't have an internal link, we do not want one in this case.
    
    * fixing space #770
    
    * fixing conflict #2 #770
    
    * fixing typos #770
    
    * fixing typos #2 #770
    
    * directory formatting #2 #770
    
    * Changed sub process to subprocess
    
    * Modified usage of user because this text is for developers. Made other minor changes.
    
    Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Apr 8, 2022
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Commits on Apr 20, 2022

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Commits on Apr 28, 2022

  1. fixed typo missed in #1477

    georgemccabe committed Apr 28, 2022
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Commits on May 11, 2022

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  2. METplus-Internal #14 Initial release

    Howard Soh committed May 11, 2022
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  3. METplus-Internal #16 initial release for python scanning

    Howard Soh committed May 11, 2022
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Commits on May 13, 2022

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  7. Merge pull request #1615 from dtcenter/feature_update_metexpress_rele…

    …ase_guide
    
    Updated METexpress release guide to reflect new use of github
    mollybsmith-noaa authored May 13, 2022
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Commits on May 14, 2022

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Commits on May 16, 2022

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Commits on May 17, 2022

  1. Merge pull request #1611 from dtcenter/feature_METplus-Internal_17_so…

    …narqube_python
    
    Feature dtcenter/METplus-Internal#17 sonarqube python
    hsoh-u authored May 17, 2022
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Commits on May 20, 2022

  1. Hofix for the develop branch to correct typo in the internal_tests/sc…

    …anning/sonarqube directory name.
    JohnHalleyGotway committed May 20, 2022
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Commits on May 24, 2022

  1. install requests python package in Docker image used in run_tests cus…

    …tom action because it appears to no longer be available in python3 that comes with alpine:latest (latest was recently updated to 3.16.0), ci-run-all-cases
    georgemccabe committed May 24, 2022
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  2. test using specific version of alpine Docker image to see if the late…

    …st version broke the automation logic, ci-run-all-cases
    georgemccabe committed May 24, 2022
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  3. Revert "test using specific version of alpine Docker image to see if …

    …the latest version broke the automation logic, ci-run-all-cases"
    
    This reverts commit e417803.
    georgemccabe committed May 24, 2022
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  5. Feature 1627 release guide (#1630)

    * Added instructions for updating the Coordinated METplus X.Y release section on the DTC website
    
    * Made some wording changes.
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    * Update docs/Release_Guide/release_steps/common/update_dtc_website.rst
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    jprestop and JohnHalleyGotway authored May 24, 2022
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Commits on May 25, 2022

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Commits on Jun 6, 2022

  1. #1614 Cycloneplotter METplotlibDeprecationWarning observed in Matplot…

    …lib versions above 3.2 (#1621)
    bikegeek authored Jun 6, 2022
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Commits on Jun 7, 2022

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Commits on Jun 8, 2022

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Commits on Jun 9, 2022

  1. Feature 1603 met data db mode (#1649)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    Co-authored-by: Christina Kalb <kalb@mohawk.rap.ucar.edu>
    3 people authored Jun 9, 2022
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Commits on Jun 10, 2022

  1. Feature 1159 discussions (#1634)

    * Initial documentation for user support
    
    * Modified to try to resolve documentation errors
    
    * Update wording and formatting
    
    * Attempt to fix formatting problem
    
    * Modified and added content
    
    * Trying out new formatting
    
    * Trying out new formatting
    
    * Made suggested changes from John.
    jprestop authored Jun 10, 2022
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Commits on Jun 13, 2022

  1. Added QC_FLAGS and ADP to the arguments correctly (#1654)

    Co-authored-by: Hank Fisher <fisherh@seneca.rap.ucar.edu>
    hankenstein2 and Hank Fisher authored Jun 13, 2022
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Commits on Jun 15, 2022

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Commits on Jun 16, 2022

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Commits on Jun 22, 2022

  1. Feature 1650 update hovmoeller (#1666)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    bikegeek and georgemccabe authored Jun 22, 2022
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  3. feature 1653 develop climo day_interval NA value (#1671)

    * moved logic to handle climo_mean/stdev dictionaries into met_config utility
    
    * moved constant variable to constants and made name uppercase
    
    * per #1599, added logic to read VAR<n> variables for climo_mean/stdev (i.e. GRID_STAT_CLIMO_MEAN_VAR1_NAME). Added function to easily format field info for a single field or list of fields with fewer arguments
    
    * added function to format field info that is easier to call than get_field_info and can eventually replace it
    
    * added line breaks to match pep8 standards, ci-run-all-diff
    
    * per 1599, added documentation for new config variables
    
    * replaced calls to get_field_info with format_field_info since it is much simpler
    
    * fixed bug where field list is never returned from function call
    
    * removed whitespace
    
    * modified logic to report an error if no commands were run at all
    
    * only report an error if the process list contains a wrapper that should generate at least 1 command. Example and CyclonePlotter wrappers do not run any shell commands, so they are excluded
    
    * per feedback in PR #1658 review, added glossary entry that is wrapper independent and provide reference to that entry instead of duplicating information for each wrapper
    
    * per #1653, add unit tests to check that day_interval value of climo_mean/stdev dictionary can be NA or an integer
    
    * per #1653, modified function to read climo variables to support NA instead of just integers
    
    * per #1653, updated unit tests to test both climo_mean and climo_stdev variables, added tests for all other climo variables
    georgemccabe authored Jun 22, 2022
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  4. feature #1673 5.0.0-beta1 release (#1674)

    Co-authored-by: jprestop <jpresto@ucar.edu>
    georgemccabe and jprestop authored Jun 22, 2022
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  6. added logic to switch DockerHub repo used to obtain MET to use dtcent…

    …er/met-dev if the tag is develop, otherwise use dtcenter/met
    georgemccabe committed Jun 22, 2022
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  7. Updates to the release instructions based on MET version 11.0.0-beta1…

    …. After restructuring the repo, remove the 'met/' prefix from some paths. Also, remove the attach_release_tarfile.rst instructions since that step is no longer required. Technically, its still needed for version 10 bugfix releases, but just removing it now is simpler.
    JohnHalleyGotway committed Jun 22, 2022
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Commits on Jun 30, 2022

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Commits on Jul 6, 2022

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  4. Feature 1531 use case CFSv2 s2s (#1587)

    * added documentation
    
    * added pic, config file, more documentation
    
    * modified config file, added to internal tests
    
    * attempt to correct docs error
    
    * added new tool-specific probability feature
    
    * Updated run option in json file
    j-opatz authored Jul 6, 2022
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Commits on Jul 7, 2022

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Commits on Jul 11, 2022

  1. feature 1684 use case HSS s2s (#1688)

    * first pass at documentation, config, and python scripts
    
    * 2nd addition of files to use case
    
    * updated config file for dir path
    
    * Update use_case_groups.json
    
    * Removed unused config options
    j-opatz authored Jul 11, 2022
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Commits on Jul 13, 2022

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Commits on Jul 14, 2022

  1. updated scripts to create Docker image containing Conda environment f…

    …or METdataio (renamed from METdatadb) to use in automated tests
    georgemccabe committed Jul 14, 2022
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  2. Feature_770_3rd_person (#1685)

    * changing from 2nd to 3rd person and fixing some spacing #770
    
    * missed we and corrected #770
    
    * typos, spacing etc #770
    
    * spelling, italics and bolding #770
    
    * removing you changing to 3rd person #770
    
    * changing to 3rd person #770
    
    * 3rd person already done.  Fixing formatting, typos etc.  #770
    
    * 3rd person already done.  Fixing formatting  #770
    
    * changing to 3rd person, fixing typos, spacing, etc. #770
    
    * changing to 3rd person, fixing typos, grammar and punctuation. #770
    
    * google doc corrections. #770
    
    * clean up #770
    
    * removing |  #770
    
    * typo #770
    
    * Fixing TOC and coding block #770
    
    * fixing note #770
    
    * one 3rd person fix.  Updating bolding and italics for file names and directories #770
    
    * Modified Python Code Analyis Tools
    
    * Modified Python Code Analyis Tools
    
    * Removed link for PROCESS_LIST. If we can't have an internal link, we do not want one in this case.
    
    * fixing space #770
    
    * fixing conflict #2 #770
    
    * fixing typos #770
    
    * fixing typos #2 #770
    
    * directory formatting #2 #770
    
    * Changed sub process to subprocess
    
    * Modified usage of user because this text is for developers. Made other minor changes.
    
    * first attempt at grammar, bolding, italics and period clean up #770
    
    * under 79 characters #770
    
    * changing to 3rd person #770
    
    * fixing typos #770
    
    * 3rd person and typos #770
    
    * fixing formatting #770
    
    * typo cleanup #770
    
    * more typo cleanup #770
    
    * adding periods to most bullet lists #770
    
    * adding periods to most bullet lists #770
    
    * changing web address to italics instead of bold, not linking because it is an example.
    
    * creating links attempt.
    
    * creating links attempt #2.
    
    * creating links attempt #3.
    
    * fixing typo for add_use_categories
    
    * removing warning block per George M.
    
    * changing sentence
    
    * no screenshots to be added
    
    * adding note box
    
    * fixing bolding
    
    * Made some minor tweaks
    
    Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Jul 14, 2022
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  3. Feature 685 group pytests (#1692)

    * per #685, added custom pytest markers for many tests so we can run groups of tests in automation to speed things up. removed unused imports from tests and removed parenthesis from assert statements when they are not needed
    
    * per #685, change logic to check if test category is not equal to 'pytest' to does not start with 'pytest' to allow groups of pytests
    
    * per #685, run pytests with markers to subset tests into groups
    
    * fixed check if string starts with pytests
    
    * added missing pytest marker name
    
    * added logic to support running all pytests that do not match a given marker with the 'not <marker>' syntax
    
    * change pytest group to wrapper because the test expects another test to have run prior to running
    
    * fix 'not' logic by adding quotation marks around value
    
    * another approach to fixing not functionality for tests
    
    * added util marker to more tests
    
    * fixed typo in not logic
    
    * added util marker to more tests again
    
    * fixed logic to split string
    
    * marked rest of util tests with util marker
    
    * fixed another typo in string splitting logic
    
    * tested change that should properly split strings
    
    * moved wrapper tests into wrapper directory
    
    * changed marker for plotting tests
    
    * added plotting marker
    
    * improved logic for removing underscore after 'not' and around 'or' to specify more complex marker strings
    
    * test running group of 3 markers
    
    * fixed path the broke when test file was moved into a lower directory
    
    * Changed StatAnalysis tests to use plotting marker because some of the tests involve plotting but the other StatAnalysis tests produce output that are used in the plotting tests
    
    * changed some tests from marker 'wrapper' to 'wrapper_a' to split up some of these tests into separate runs
    
    * test to see if running pytests in single job but split into groups by marker will improve the timing enough
    
    * fixed typos in new logic
    
    * removed code that is no longer needed (added comment in issue #685 if this logic is desired in the future)
    
    * per #685, divided pytests into smaller groups
    
    * added a test that will fail to test that the entire pytest job will fail as expected
    
    * add error message if any pytests failed to help reviewer search for failed tests
    
    * removed failing test after confirming that entire pytest job properly reports an error if any test fails
    
    * turn on single use case group to make sure logic to build matrix of test jobs to run still works as expected
    
    * turn off use case after confirming tests were created properly
    
    * added documentation to contributor's guide to describe changes to unit test logic
    
    * added note about adding new pytest markers
    georgemccabe authored Jul 14, 2022
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  5. feature #1402 config cleanup - met_tool_wrapper (#1690)

    * Per #1402, added additional comments to config file including links to documentation. Added old format version of config file that contain many comments with the _DIR/_TEMPLATE variables grouped together for comparison
    
    * rearrange variables and added link to user's guide
    
    * updated comment to note that variables in the section are optional
    
    * added URL for use case documentation
    
    * per #1402, rearrange and clean up config file
    
    * added missing config variables from CyclonePlotter to glossary and wrappers doc pages
    
    * per #1402, clean up use case conf files, ci-run-all-diff
    
    * per #1402, clean up Point2Grid conf file
    
    * per #1402, clean up rest of met_tool_wrapper use case conf files, ci-run-all-diff
    
    * removed conf file that is no longer needed
    georgemccabe authored Jul 14, 2022
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Commits on Jul 15, 2022

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  3. changed URL to use latest instead of develop because even though the …

    …use case currently is only available in develop, it will eventually be in latest when the next release is created
    georgemccabe committed Jul 15, 2022
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Commits on Jul 18, 2022

  1. Feature 1694 s2s subgroups (#1697)

    * per #1694, moved 4 use cases from s2s to s2s_mjo, updated paths accordingly, and turned on all s2s use cases to test that they all run successfully after the changes
    
    * per #1694, fixed paths to s2s_mjo conf files
    
    * updated documentation for use cases that were moved from s2s to s2s_mjo
    
    * attempt to free up unused disk space in GHA runner environment
    
    * moved 4 s2s use cases into s2s_mid_lat
    
    * added new model application categories to contrib guide for adding new use cases
    
    * per #947, changed convection_allowing_models use cases to short_range
    
    * changed which use case tests run to the ones that are failing and added other METdbLoad use case to see if that fails as well
    
    * test to determine which files are preventing MySQL database from being created properly
    
    * test 2 to determine which files are preventing MySQL database from being created properly
    
    * test 3 to see if removing these files is not the cause of the METdbLoad failure
    
    * updated references to METdatadb to METdataio since the repository was renamed
    
    * fixed typo
    
    * changed path to sql file needed to create database because it was moved from METviewer to METdataio
    
    * fixed path to sql file that was moved from METviewer to METdataio
    
    * removed temporary fix because metdataio conda env was created in the dtcenter/metplus-envs:metdataio Docker image
    
    * added note to update path when METviewer Dockerfile changes to reflect METdatadb rename to METdataio, ci-skip-unit-tests
    
    * fixed path to METdataio repo
    
    * add back commands to free up disk space because issue with METdbLoad use case was likely not related, ci-skip-unit-tests
    
    * run all tests with ci-run-all-diff
    
    * remove use case group added for testing, ci-skip-all
    
    * changed exit code for diff tests to 2 so it is easier to see if a use case test job failed due to an actual failure or due to differences in the output
    
    * changed grouping of s2s mid lat use cases to original grouping to prevent warning that artifact contains more than 10,000 files. The 2 WeatherRegime use cases produce a lot of output files, so splitting them up should resolve this warning
    
    * per #1694, changed all references to convection allowing models to short range in the Verification Datasets section of the documentation
    
    * changed URLs to develop version of documentation to a URL relative to the current version of the documentation to match the quick search links from the METplus User's Guide
    
    * per #947, changed references to convection_allowing_model (without the s) to short_range that were missed
    
    * updated use case test scripts to rename convection_allowing_models to short_range and added note to alert developers that the list of use cases in the script is not maintained and therefore not complete
    georgemccabe authored Jul 18, 2022
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Commits on Jul 19, 2022

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Commits on Jul 22, 2022

  1. per #1402, rearrange and clean up config files for s2s, s2s_mid_lat, …

    …and s2s_mjo. ci-run-all-diff
    georgemccabe committed Jul 22, 2022
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  2. fix logic that logs default value used to properly output False vs. e…

    …mpty string. Previously a False default value was logged as set to empty string
    georgemccabe committed Jul 22, 2022
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  3. fixed logic to not require MTD_SINGLE_RUN to be set for MTD by using …

    …a default value of False
    georgemccabe committed Jul 22, 2022
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  4. added wrapped StatAnalysis config file back because the config file f…

    …or this wrapper is optional and different behavior will be executed if no config file is set
    georgemccabe committed Jul 22, 2022
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  6. added wrapped StatAnalysis config file back because the config file f…

    …or this wrapper is optional and different behavior will be executed if no config file is set
    georgemccabe committed Jul 22, 2022
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  13. add support for setting match_points in the TCPairs wrapped config fi…

    …le and replace MET_CONFIG_OVERRIDE variable with TC_PAIRS_MATCH_POINTS
    georgemccabe committed Jul 22, 2022
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  14. per #1402, rearrange and clean up config files for tc_and_extra_tc us…

    …e cases. ci-run-all-diff
    georgemccabe committed Jul 22, 2022
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Commits on Jul 25, 2022

  1. Feature 650 questions2ask (#1573)

    * adding new questions section
    
    * changing table config #650
    
    * odd section bullets #650
    
    * adding in the rest of the text but not formatted #650
    
    * first attempt at bullet formatting #650
    
    * fixing errors #650
    
    * fixing errors take 2 #650
    
    * fixing errors take 3 #650
    
    * fixing errors take 4 #650
    
    * fixing errors take 5 #650
    
    * Update systemconfiguration.rst
    
    Cleaning up "you" and changing to 3rd person.  Except where "you" is referenced by a program example  #650
    
    * Update systemconfiguration.rst
    
    Taking another stab at making the bullets consistent #650
    
    * creating new getting_started file to house Questions to Consider that was removed from the systemconfiguration file.
    
    * moving Running METplus into getting_started file and removing it from the systemconfiguration. #650
    
    * updating index to include new Getting Started chapter #650.
    
    * updating index to include new Getting Started chapter take 2 #650.
    
    * shortening the chapter name to Installation and Configuration #650
    
    * using updated questions #650
    
    * Made a few formatting/wording changes
    
    * Removed text
    
    * adding flowchart question and adding periods #650
    
    * bolding files #650
    
    * adding changes John O. recommended. #650
    
    * small John O. change #650
    
    * removing duplicate question #650
    
    * fixing question order #650
    
    * fixing typos Tara requested
    
    * answering question 2.1.1.7
    
    * adding Use Case Rules link to 2.1.1.7
    
    * adding proper link to the Add Use Cases in the Contributors Guide
    
    * trying to get link to work
    
    * trying to get link to work take 2
    
    * trying to get link to work take 3
    
    * trying to get link to work take 4
    
    * removing unnecessary link
    
    * fixing punctuation
    
    Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Jul 25, 2022
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Commits on Jul 26, 2022

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  2. feature #1566 Use Python 3.8.6 for automated tests (#1710)

    * changes needed to create v5.0 version of metplus_base docker/conda environment
    
    * update metplotpy conda env to use python 3.8 and new package list, then test to see if use cases that use that env still work using the .v5 version
    
    * turn on use cases that use metplotpy_env to test new conda env
    
    * add .v5 to metplotpy conda env to test that environment
    
    * removed cartopy from requirements because cartopy may no longer be needed
    
    * changed conda environment used for use case
    
    * update conda before building environments
    
    * updated instructions and scripts to build python environments using Python 3.8.6 for METplus v5
    
    * updated conda env to include .v5
    
    * updated automated test logic to use new .v5 Docker images that use Conda environments built from Python 3.8.6
    
    * rebuilt gempak and gfdl-tracker docker images to use .v5 extension to be consistent in the automation logic and avoid special behavior for those environments
    
    * added note to update OS packages to prevent wget certificate errors
    
    * renamed variables to be more clear which path they are actually storing
    
    * Updated logic to no longer handle gempak and gfdl-tracker envs differently by excluding the version number. Cleaned up logic to add version number extension to conda environment names as needed
    
    * updated scripts to create Docker image containing Conda environment for METdataio (renamed from METdatadb) to use in automated tests for v5
    
    * turn off all use cases
    
    * turn on use cases that previously failed
    
    * turn off use cases tests that passed
    
    * turn off all use cases
    
    * per #1566, added explicit version numbers for each Python package that is installed in the Docker Conda environments used for the automated tests to ensure that the same environment will be generated even if the default version of the package differs from the env used to create them
    georgemccabe authored Jul 26, 2022
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  4. change job control rules to ignore commit message keywords if running…

    … on develop or main_vX.Y branches because I discovered that the commit message from doing a squash and merge in a pull request will contain any keywords used during development
    georgemccabe committed Jul 26, 2022
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Commits on Jul 27, 2022

  1. bugfix #1713 develop METPLOTPY_BASE (#1715)

    * per #1713, remove setting of METPLOTPY_BASE env var in each use case config file and instead set it in the global config settings for the automated test environment, ci-run-all-cases
    
    * per #1713, added instructions to set METPLOTPY_BASE via [user_env_vars] in the default METplus config file upon install if necessary
    
    * per #1713, added documentation to describe METPLOTPY_BASE variable that was added to the defaults.conf file
    georgemccabe authored Jul 27, 2022
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  2. turn off use cases

    georgemccabe committed Jul 27, 2022
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  5. if TC_PAIRS_MATCH_POINTS is unset, set 'match_points = TRUE;'. This i…

    …s done because the value in the TCPairsConfig_wrapped file was TRUE, but the default value in the MET config file is FALSE. Typically if a METplus variable is unset, we do not set any value for the corresponding env var which results in using the value in the default MET config file. Doing this would cause many use cases to change their results unless TC_PAIRS_MATCH_POINTS=True was added to each use case config file. We could do this for our repository, but any use case config files outside of the METplus repo would need to be updated
    georgemccabe committed Jul 27, 2022
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  9. log error and increment error count if required lat/lon bound variabl…

    …es are not set instad of calling sys.exit
    georgemccabe committed Jul 27, 2022
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Commits on Jul 28, 2022

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Commits on Aug 3, 2022

  1. Update index.rst

    replace METdatadb with METdataio
    bikegeek authored Aug 3, 2022
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  2. Update metdatadb.rst

    Replace metdatadb with metdataio
    bikegeek authored Aug 3, 2022
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  3. renamed from metdatadb

    bikegeek committed Aug 3, 2022
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  9. Update the Release Guide while creating the MET-11.0.0-beta2 developm…

    …ent release. Automatic Zenodo updates for each MET release have been DISABLED since they were being created for each development release. Revise the MET instructions to manually update the MET version on Zenodo only for official releases, not development or bugfix releases.
    JohnHalleyGotway committed Aug 3, 2022
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  10. Merge pull request #1722 from dtcenter/feature_1402_config_cleanup_mo…

    …del_app
    
    Feature #1402 config cleanup model applications
    hankenstein2 authored Aug 3, 2022
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  11. Changed version number

    hankenstein2 committed Aug 3, 2022
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  12. Added release notes

    hankenstein2 committed Aug 3, 2022
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  13. Merge pull request #1727 from dtcenter/feature_1726_V5.0.0-beta2

    Feature 1726 v5.0.0 beta2
    hankenstein2 authored Aug 3, 2022
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Commits on Aug 4, 2022

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Commits on Aug 8, 2022

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Commits on Aug 10, 2022

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Commits on Aug 16, 2022

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Commits on Aug 17, 2022

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  2. Feature 1746 recreate release (#1751)

    * Adding instructions for recreating and existing release
    
    * Reorder the step's based on suggestions from @georgemccabe
    jprestop authored Aug 17, 2022
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Commits on Aug 22, 2022

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Commits on Aug 23, 2022

  1. Fixing typo

    jprestop committed Aug 23, 2022
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Commits on Aug 24, 2022

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Commits on Aug 26, 2022

  1. Feature update labels (#1765)

    * Modifications for METbaseimage
    
    * Update README.md
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    jprestop and JohnHalleyGotway authored Aug 26, 2022
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Commits on Aug 30, 2022

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  2. Per dtcenter/METplus-Internal#20, change log output to always include…

    … username and include user ID if it is available
    georgemccabe committed Aug 30, 2022
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Commits on Sep 1, 2022

  1. Per dtcenter/METplus-Internal#20, fixed bug introduced from commit 45…

    …8714c to develop where error is thrown if username cannot be obtained, which occurs in environment running GHA tests
    georgemccabe committed Sep 1, 2022
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  2. Revert "Per dtcenter/METplus-Internal#20, fixed bug introduced from c…

    …ommit 458714c to develop where error is thrown if username cannot be obtained, which occurs in environment running GHA tests"
    
    This reverts commit fb2d093.
    georgemccabe committed Sep 1, 2022
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  3. Revert "Per dtcenter/METplus-Internal#20, change log output to always…

    … include username and include user ID if it is available"
    
    This reverts commit 458714c.
    georgemccabe committed Sep 1, 2022
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Commits on Sep 6, 2022

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Commits on Sep 7, 2022

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Commits on Sep 8, 2022

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  2. Feature dtcenter/METplus-Internal#15 checksum for release (#1769)

    Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
    georgemccabe and jprestop authored Sep 8, 2022
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Commits on Sep 9, 2022

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  5. Updating note format

    jprestop authored Sep 9, 2022
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  7. Revert "update Python version to 3.8.6"

    This reverts commit c1e6cbc.
    georgemccabe committed Sep 9, 2022
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Commits on Sep 12, 2022

  1. added return value checking to error and exit a non-zero value if doc…

    …ker build or docker push fail
    georgemccabe committed Sep 12, 2022
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Commits on Sep 19, 2022

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  3. Feature #1330 MJO ENSO use case (#1794)

    Co-authored-by: cristianastan2 <cstan@gmu.edu>
    georgemccabe and cristianastan2 authored Sep 19, 2022
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