Releases: nf-core/scrnaseq
Releases · nf-core/scrnaseq
2.7.1
What's Changed
- Fix that tests have not been executed with nf-test v0.9 (#359)
- Add support for 10XV4 chemistry (#348)
- Fix issues with predefined STAR index (#350)
- Update modules (#351)
- Fix resource specifications for
cellranger mkref
/cellrangerarc mkref
(#352)
See also the CHANGELOG.
New Contributors
- @nick-youngblut made their first contribution in #348
- @eolaniru made their first contribution in #360
Full Changelog: 2.7.0...2.7.1
2.7.0
What's Changed
- Make it work without specifying GTF file by @grst in #322
- Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in #328
- Adding cellrangermulti subworkflow by @fmalmeida in #276
- Add
check_max
to AlevinQC time limit by @nictru in #335 - Bump version for v2.7 release by @grst in #325
- Include cellrangerarc in checker by @fmalmeida in #337
- v2.7.0 release by @grst in #336
New Contributors
Full Changelog: 2.6.0...2.7.0
2.6.0
What's Changed
- Bump version to 2.6.0dev by @grst in #295
- Important! Template update for nf-core/tools v2.12 by @nf-core-bot in #298
- Nf-test by @grst in #291
- Important! Template update for nf-core/tools v2.13.1 by @nf-core-bot in #309
- kallisto|bustools 0.28.2 update by @gennadyFauna in #294
- Fix to issue 299 and 297 by @heylf in #300
- Fix issue 81, "call empty droplets" by @fmalmeida in #301
- 316 update cellranger modules to latest nf coremodules versions by @fmalmeida in #317
- Bump version to 2.6.0 by @grst in #320
- Add cellrangerarc snippet back by @fmalmeida in #321
- Release v2.6.0 by @grst in #318
New Contributors
- @gennadyFauna made their first contribution in #294
Full Changelog: 2.5.1...2.6.0
2.5.1
nf-core/scrnaseq 2.5.0
What's Changed
- Better support for custom chemistries by @grst in #273
- Important! Template update for nf-core/tools v2.11.1 by @nf-core-bot in #279
- Adding cellranger-arc (multiome scRNA-seq + scATAC support) by @heylf in #274
- increase time limits by @grst in #281
- Fix time limits by @grst in #284
Full Changelog: https://github.com/nf-core/scrnaseq/blob/dev/CHANGELOG.md#v250---2024-01-02
nf-core/scrnaseq 2.4.1
What's Changed
- fix cellranger filename check by @grst in #261
- Fix 263 by @grst in #267
- Important! Template update for nf-core/tools v2.10 by @nf-core-bot in #269
- Release v2.4.1 by @grst in #268
Full Changelog: 2.4.0...2.4.1
nf-core/scrnaseq 2.4.0 - "Lime Platinum Crab"
What's Changed
- Fix typo causing empty version imformation for mtx_conversion subworkflow (#254)
- Add
singularity.registry = 'quay.io'
and bump NF version to 23.04.0 (#237) - Fixed issue with file collisions while using cellranger (#232)
- Fix issue where multiqc inputs tried to access objects that did not exist (#239)
- Removed
public_aws_ecr
profile (#242) - Include cellranger in MultiQC report (#244)
- Nf-core template update to v2.9 (#245)
- Update cellranger and fastqc module (#246).
The updated cellranger module now automatically renames input FASTQ
files to match the expected naming conventions.
New Contributors
nf-core/scrnaseq v2.3.2 "Sepia Samarium Salmon"
This release is focused simply on ensuring as many containers as possible are hosted on quay.io.
What's Changed
- Move containers for pipeline to quay.io by @drpatelh in #233
- Dev -> Master for 2.3.2 release by @drpatelh in #234
Full Changelog: 2.3.1...2.3.2
nf-core/scrnaseq v2.3.1 "Yellow Strontium Pinscher"
What's Changed
- Important! Template update for nf-core/tools v2.8 by @nf-core-bot in #221
- Public aws ecr profile by @adamrtalbot in #225
- Fix code comment by @stan0610 in #224
- Update docs for release 2.3.1 by @adamrtalbot in #227
- Remove globs from ecr profile by @adamrtalbot in #228
- Release candidate v2.3.1 by @adamrtalbot in #226
New Contributors
- @adamrtalbot made their first contribution in #225
- @stan0610 made their first contribution in #224
Full Changelog: 2.3.0...2.3.1
v2.3.0 - 2023-05-03 Steelblue Waspaloy Dachshund
Enhancements & fixes
- Fix problem on samplesheet check related to amount of columns ([#211])
- 211 samplesheet error in v220 when more than 3 fields are present by @fmalmeida in #216
- Remove unused --bustools_correct and --skip_bustools and fix bugs in schema defaults by @drpatelh in #219
- Fixed bug in starsolo output cardinality by @robsyme in #220
Full Changelog: 2.2.0...2.3.0