Brings bulk and pseudobulk transcriptomics to the tidyverse

integrated RNA-seq Analysis Pipeline

R package for pathway analysis in scRNA-seq data

Compare different differential abundance and expression methods

Explore and share your scRNAseq clustering results

Experimental design framework for scRNAseq population studies (eQTL and DE)

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Differential analysis of multi-omics data based on the Tweedie distribution

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

command line bioinformatic scripts written in R

Make rapid visualizations of RNA-seq data in R

A comprehensive R package for label-free proteomics data analysis and modeling

The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

Bacterial Epigenomics Analysis SuiTe

Collection of R-apps for VisR software

Interactive Shiny application for tidyproteomics