Release 2.2.2rc2 #704
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Release 2.2.2rc2 #704
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replace status page domain name
* Added library_suffix.md * Fixed and updated misc documentation
Added Portal LabMetadata LibraryID suffix annotation treatment
Added documentation on how to trigger DRAGEN Alignment QC
…ever * This allows many FASTQ input files to the TN workflow! Resolves #671
Added Tumor Normal engineParameter override for tesUseInputManifest never
Updated LabMetadata model enum for assay, type, source
* Updated S3 event parser to handle ObjectCreated and ObjectDeleted come through EventBridge event envelope. * Added relevant unit test cases as guard-rail around parser logic * Part of story #684 * Related umccr/infrastructure#434
…ge-envelope Added support for EventBridge S3 event processing
Updated doc for WTS sample with multiple lane FASTQs
Updated LabMetadata model enum for assay, type, source - migration script
* Upgraded Django v5 * Upgraded Nodejs v20 * Upgraded Yarn v4 * Retained Serverless v3 * Retained gspread-pandas v3.3
Bumped dependencies
* Fixed Lambda runtime by pinning numpy v1 * Effectively pinning pandas v2.1 * Fixed local dev script
Fixed pandas dataframe applymap future warning
Updated doc library_suffix.md
* It dynamically query through LibraryID(s) of Subject from pipeline output location for well-known files of interest. Resolves #684
…-results Implemented Subject endpoint to include ctTSOv2 results from ICAv2 BYOB
Fixed Subject having no ctTSOv2 assay library
reisingerf
approved these changes
Jul 2, 2024
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Release
2.2.2rc2for Staging