Release 2.2.2 #711
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Release 2.2.2 #711
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* Propose planning from Portal to OrcaBus for fast tracking TSO v2 assay pipeline orchestration * Minor fix in README
Added the plan about automated pipeline extension
* This removes Portal now obsolete domain pattern throughout i.e. `[api.]data.[dev|stg|prod].umccr.org` * Along with detaching the associated SSL certificate from ACM * This will go multiple stages and this is the Phase 1 of umccr/infrastructure#272
Deprecated data domain name pattern
Added Portal database backup documentation
* Explain and document how it works currently, intended use cases, constraint rules, intention and design.
Fix: Running local docker-compose.yml
* Removed obsolete version field
Fixed docker compose mysql-8.4 for CodeBuild CI
* Added note about keeping it maintain in sync with RDS Aurora MySQL major version https://docs.aws.amazon.com/AmazonRDS/latest/AuroraUserGuide/Aurora.VersionPolicy.html Related #670
Fixed and pinned docker compose mysql-8.0 for CodeBuild CI and local dev
Added Portal Run ID documentation
Added test case to debug & verify wgs rerun lib skip auto-pairing
…ases Improved RNAsum v1 input keys test cases
Update RNAsum orchestration
* Added ignore commit to known rectified incident from past history.
Added ggshield config
Fixed BSSH mock event generator script
Bumped dependencies
* Fixed Lambda runtime by pinning numpy v1 * Effectively pinning pandas v2.1 * Fixed local dev script
Fixed pandas dataframe applymap future warning
Updated doc library_suffix.md
* It dynamically query through LibraryID(s) of Subject from pipeline output location for well-known files of interest. Resolves #684
…-results Implemented Subject endpoint to include ctTSOv2 results from ICAv2 BYOB
Fixed Subject having no ctTSOv2 assay library
…-presign-api add content disposition header for s3 presign api
…ader add filename in disposition header
Bumped dependencies
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CAB request is a go, ditto - https://umccr.slack.com/archives/CP356DDCH/p1721173590790749 |
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FYI @reisingerf |
williamputraintan
approved these changes
Jul 17, 2024
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Runway clear. Taking off.! |
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See https://github.com/umccr/data-portal-apis/milestone/20?closed=1
Ocicat (Backport 2) Release Validation Documentation
https://docs.google.com/document/d/1KZlO_VLieDc2nNPqkaH2UzY5lLV82I9eL_S64X3xEu0/edit