Releases · kircherlab/cfDNA-UniFlow

What's Changed

feat: add automatic reference genome download and indexing for bwa; resolves #1, resolves #3 by @sroener in #18
feat: Merge trimming and mapping update; resolves #8, resolves #9, resolves #10 by @sroener in #19
Feature: add Mosdepth; Fix: interleaved trimmed reads to R1 and R2 by @sroener in #22
Update: rule optimization; add ichorCNA by @sroener in #24
Develop by @sroener in #25
refactor: update testsample URL by @sroener in #26
Develop by @sroener in #27
fix: input files by @sroener in #28
Refactor: optimize for PDF generation by @sroener in #29
fix: remove redundancy in URL-helper function by @sroener in #30
Develop by @sroener in #31
refactor: function name consistency by @sroener in #32
fix: pin samtools version by @sroener in #33
Develop by @sroener in #34
adjustments in config file for test run by @leaburkard in #35
Develop by @sroener in #37
Develop by @sroener in #38
doc: fix fig S1 alignment by @sroener in #39
Merge updates by @sroener in #40
Update documentation by @sroener in #41
Update supplement by @sroener in #42
Sync branches by @sroener in #43
Minor README update. by @sroener in #44
Develop by @sroener in #45
Update Documentation by @sroener in #46

Full Changelog: https://github.com/kircherlab/cfDNA-UniFlow/commits/v1.0.0