What's Changed
- feat: add automatic reference genome download and indexing for bwa; resolves #1, resolves #3 by @sroener in #18
- feat: Merge trimming and mapping update; resolves #8, resolves #9, resolves #10 by @sroener in #19
- Feature: add Mosdepth; Fix: interleaved trimmed reads to R1 and R2 by @sroener in #22
- Update: rule optimization; add ichorCNA by @sroener in #24
- Develop by @sroener in #25
- refactor: update testsample URL by @sroener in #26
- Develop by @sroener in #27
- fix: input files by @sroener in #28
- Refactor: optimize for PDF generation by @sroener in #29
- fix: remove redundancy in URL-helper function by @sroener in #30
- Develop by @sroener in #31
- refactor: function name consistency by @sroener in #32
- fix: pin samtools version by @sroener in #33
- Develop by @sroener in #34
- adjustments in config file for test run by @leaburkard in #35
- Develop by @sroener in #37
- Develop by @sroener in #38
- doc: fix fig S1 alignment by @sroener in #39
- Merge updates by @sroener in #40
- Update documentation by @sroener in #41
- Update supplement by @sroener in #42
- Sync branches by @sroener in #43
- Minor README update. by @sroener in #44
- Develop by @sroener in #45
- Update Documentation by @sroener in #46
New Contributors
- @sroener made their first contribution in #18
- @leaburkard made their first contribution in #35
Full Changelog: https://github.com/kircherlab/cfDNA-UniFlow/commits/v1.0.0
Contributors
sroener and leaburkard