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LORIS-MRI Release v25.0.0
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@laemtl laemtl released this 17 Jul 19:23
· 70 commits to main since this release
v25.0.0
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Learn about vigilant mode.

This release of the LORIS-MRI repository accompanies the LORIS 25.0.0 release.

New Features

  • [EEG-BIDS] Add support for events.json file & HED Tags (#769, #968)
  • [dcm2bids] Add support for images that do not have a series description (#778)
  • [EEG-BIDS] Electrode coordinate systems (#885, #908)

Bug fixes

  • HRRT PET install documentation (#813)
  • Updated rules to set the default project, cohort (#809, aces/Loris#8384)
  • Refactor remaining array configs to use ConfigOB instead of the DBI library (#770)
  • [Perl pipeline] Do not duplicate violation entry if it already exists (#896)
  • Chunking - add _get_info missing parameter (#958)
  • [bids_imports] Fix derivative annotation files copied over to raw folders (#776)
  • [petupload_cron_prod] Automatically create dirs (#966)
  • [imaging_non_minc_insertion] Log execution date (#985)
  • [imaging_non_minc_insertion] Error message obtained when an invalid upload ID is specified on the command line (#984)
  • [minc_to_bids_converter.pl] BIDS validator: Fix authors array (#1003)
  • [register_processed_data] Report Project ID missing when it really is (#987)
  • Add ProjectID to scanner candidate (#914)
  • Enforce use of -uploadID in script uploadNeuro/tarchive_validation.pl (#974)
  • Change mkdir to make_path in run_defacing_script.pl (#978)
  • [register_processed_data] Add more validation for options -sourceFileID and -inputFileIDs (#999)
  • [imaging_non_minc_insertion] Validate -date_acquired argument (#1002)
  • [dicomSummary] Improve option behaviour and use sdiff instead of tkdiff for differences (#1000)
  • [get_dicom_files] fix -id parameter (#995)
  • Control DB parameters initialization (#991)

Documentation

  • Fix MriScanner::determine_scanner_information description (#993)
  • Fix documentation of replicate raisinbread for MCIN dev tool (#976)
  • Addition of a PET import tool example for BIC PET transfers (#840)

Notable SQL changes

Note that the Subproject table has been renamed Cohort in LORIS v25.0.0 (#882, aces/Loris#7817)

Notable non-SQL changes

  • Running batch scripts under tools/ directory with QSUB may fail on Ubuntu 22. To fix this, turn off the is_qsub configuration by setting the Project batch management used config to 'No' under the Imaging Pipeline tab of the Configuration module.
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