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v2023.0.0
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v2023.0.0 - 10th Mar 2023

Physics

  • Dust nucleation: chemical network allows for self-consistent (carbon-rich) dust formation in simulations once the temperature drops below the condensation temperature, e.g. in AGB star winds (Siess et al. 2022). Just set DUST_NUCLEATION=yes
  • Implementation of implicit flux limited diffusion solver for radiation based on Whitehouse & Bate 2004, Whitehouse, Bate & Monaghan (2005) and Bate & Keto (2015). The implementation is a direct port of the solver used in Matthew Bate's sphNG code, generously contributed by Matthew and ported to phantom by Mike Lau and Daniel Price.
  • Compute and store a mass accretion rate for each sink particle based on the accreted mass over one dtmax interval. This can be used in MCFOST to provide accretion luminosity from each sink particle (Borchert et al. 2022a, 2022b)
  • Allow for use of PdV work and shock heating as source terms in MCFOST when performing live-coupled simulations with phantom+MCFOST (thanks to Elli Borchert and Sahl Rowther, #344; see appendix of Borchert et al. 2022b)
  • New equation of state that implements gas plus radiation pressure plus recombination of Hydrogen and Helium (Lau et al. 2022; #267)
  • New stratified disc locally isothermal equation of state added (thanks to Caitlyn Hardiman; #268, #278, #308)
  • GR simulations now work with the gas+radiation equation of state by implementing an option to evolve "s" as the entropy instead of P/rho^gamma (thanks to Fitz Hu; #250, #324)
  • New spherical raytracer for sink particle radiation / dust acceleration, particularly in the context of stellar winds (thanks to Mats Esseldeurs, Lionel Siess, Ward Homan)
  • option to use reconstruction on velocities to reduce dissipation away from shocks in the GR code (where the standard Cullen & Dehnen shock switch cannot be used)
  • added conservation check which stops the MHD code if hdivB/B is too large AND hdivbbmax_max == 1 (thanks to James Wurster)
  • added an override to force sink creation if density is too high; also an addition step in the barotropic equation of state at very high densities (thanks to James Wurster)
  • option for heating from sink particles, which adds heats all particles within the softening radius of the sink according to the sink particle luminosity (#216)
  • mass-weighted interpolations of dust-gas quantities are now default in dust growth (#377; thanks to Stephane Michoulier)
  • option for Aeolian erosion in dust growth module (#365, #372; thanks to Stephane Michoulier)
  • Added possibility of varying beta cooling with radius as a power law (#361; thanks to Cristiano Longarini)
  • option for damping boundary conditions for comparing phantom to simulations of planet-disc interaction with grid codes (#351)

Setup

  • can now set up hierarchical quadruple star systems in setup_disc (thanks to Amena Faruqi; #355)
  • setup and simple cooling function added for cooling shock problem from Creasey et al. (2011)
  • can now give --maxp=1e7 flag to phantomsetup instead of compiling with MAXP= which is now obsolete
  • major reorganisation of setup_star into neat subroutines with high level functions (#297, also #203)
  • dumps written during relax_star now usable as starting file
  • various improvements to setting up stars with variable composition (thanks to Mike Lau)
  • can now setup triple stars in the stellar wind setup (thanks to Lionel Siess), see e.g. Maes et al. 2021, Malfait et al. 2021
  • major overhaul of setup_sphereinbox to include turbulence and one-fluid dust; and many more optional input variables (thanks to James Wurster)
  • option for particle shuffling in the Sedov blast wave setup (thanks to James Wurster)
  • simplified setup options when adding planets in setup_disc
  • sensible physical units chosen for special relativistic shock tubes (thanks to Fitz Hu)
  • added versatility to setup of power-law size distribution when setting up dust (thanks to Mark Hutchison)
  • new SETUP options for isothermal (dusty) self gravitating disc setups (thanks to Cristiano Longarini)
  • fixed default cooling in disc_setup (#114; thanks to Benedetta Veronesi)

Bugs

  • Bugs fixed with using dump files from sphNG to phantom (thanks to Alison Young; #343)
  • Bug fix with hsoft=0 when reading MESA file without softening in star setup
  • Various bug fixes when setting up Bonnor-Ebert density profiles in the sphere-in-box setup (thanks to James Wurster; #303)
  • Bug fix with automated download of data files
  • Bug fix in implicit cooling when du/dt goes to zero (#328; thanks to Lionel Siess)
  • Various bug fixes with dust nucleation and cooling (Siess)
  • Bug fix with artificial conductivity when employing the Minkowski metric in General Relativity
  • various issues compiling phantom with MCFOST fixed (thanks to Christophe Pinte; #199)
  • seg fault in dump file read utilities fixed if attempting to read an array that has not been allocated
  • various bugs with phantom2hdf5 fixed (thanks to Stephen Nielson #368)
  • Bug fix reading the default star data files from the data/ directory
  • Bug fix in Farris et al. (2014) equation of state (#282; thanks to Enrico Ragusa)
  • Bug fix for dustfrac and dust-to-gas ratio in dustydisc setup (#273; thanks to Mark Hutchison)
  • Bug fix in the initialisation of dustfrac in setup_disc
  • Fixed critical bug in calculation of Teff in stellar wind setups (thanks to Lionel Siess)
  • Fix the makefiles qscript target to write correct slurm scripts for MPI jobs (#269)
  • Bug fix with sink particle creation in MPI (Chan, Liptai via ADACS; #234)
  • Bug fix with Koyama & Inutuska cooling; works now for both implicit & explicit (thanks to James Wurster)
  • Bug fixes in gravitational wave inspiral with star+sink (thanks to Martina Toscani; #367)
  • libtool error fixed, use ar rcs to create libraries

Utils

  • New moddump utility for importing sphNG dumps containing sink particles into phantom (thanks to Alison Young)
  • New moddump to add a flyby to an evolved simulation (sink particle in parabolic orbit); thanks to Cristiano Longarini
  • improved common envelope analysis routines (Lau, Gonzalez, Nielson; #334)
  • moddump_sink allows modification of all sink particles in the simulation
  • better error messages in moddump_binary if not enough memory is allocated to add a second star (Lau)
  • cleanup of moddump_binary to improve code clarity (#257)
  • moddump_binary can be used to set up binary of two stars with sink-particle stellar cores (thanks to Mike Lau; #362)
  • moddump_rotate to add solid body rotation to a sphere of gas (Lau; #290)
  • diffdumps returns a non-zero exit code if files differ (Chan, Liptai via ADACS; #237)

Performance

  • major optimisation of MPI communication to avoid bottleneck of openMP code (#310; Chan, Liptai via ADACS)
  • optimisation of particle balance between MPI threads (Chan, Liptai via ADACS; #316)
  • timing information written in the log file for local and remote parts of density and force (Chan, Liptai via ADACS; #271)
  • various MPI and OpenMP memory allocation optimisations and bug fixes (Chan, Liptai via ADACS; #209, #262; #243)
  • Optimisations to reduce unnecessary calls when compiling with [MPI=yes]{.title-ref} but running with only 1 MPI task (Chan, Liptai via ADACS; #259)

Other

  • Switched off the automatic decrease of dtmax if the time between dumps is too large (#342)
  • added option to create restart dumps if we go > 24h without a dump (#352; thanks to James Wurster)
  • better help for SETUP= flag in Makefile
  • configuration added for Flatiron cluster (SYSTEM=rusty and SYSTEM=popeye; thanks to Mike Lau)
  • further work to remove unnecessary ifdefs (#55)
  • Added MPI unit tests to the testsuite (Chan, Liptai via ADACS; #220, #222, #229, #235, #217, #322)
  • major reorganisation of cooling modules; added cooling_solver, cooling_functions and other modules
  • bots script can be run as a pre-commit action (Chan, Liptai via ADACS; #223, #317)
  • Makefile split into Makefile_setups, Makefile_systems and Makefile_qscripts to avoid clutter (Liptai via ADACS; #261; see #253)
  • Timing hierarchy drawn in a nicer way using a tree diagram (Chan via ADACS; #254)
  • makefile exit codes are propagated through to calling scripts (#256)
  • test suite is now also run using ifort on github runners (Chan, Liptai via ADACS; #228)
  • github actions checks on pull requests are now run in parallel (Chan, Liptai via ADACS; #224)
  • if dt is too small, exit in step with useful information rather than in get_ibin (thanks to James Wurster)
  • option to run bots on staged files only (#213)

Documentation

  • added list of pre-cooked setups (SETUP=blah) to docs
  • added list of all equation of state options (#311)
  • additional documentation on the file format specification
  • Documentation added regarding Sarracen
  • Machine-specific instructions added for Kennedy (St. Andrews) and DiAL
  • Documentation for self-gravitating and gravitationally unstable disc setups (thanks to Cristiano Longarini)
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