10.5.beta5

What's Changed

• Demote jmol to optional by @mkoeppe in #38504
• build/pkgs/nauty: Update to 2.8.9 by @mkoeppe in #38572
• Fix is_homogeneous weight bug by @grhkm21 in #38575
• crypto/sbox.pyx: remove unreachable code by @gmou3 in #38576
• Add various project URLs for PyPI by @mkoeppe in #38577
• adding a warning about iteration over words by @fchapoton in #38585
• Add is_integral method to algebraic numbers by @user202729 in #38592
• Add reflection_index_set() and reflection() methods for permutations by @tscrim in #38598
• Allow for python sets to be counted as sets by @thecaligarmo in #38602
• Add warning filter for DeprecationWarning while doc build by @kwankyu in #38608
• fix the linter by @fchapoton in #38609
• fix and activate E303 check in pyx files by @fchapoton in #38610
• pep and ruff cleanup in semirings and tropicals by @fchapoton in #38611
• pep8 cleanup in algebras by @fchapoton in #38612
• categories/morphism.pyx: remove some noexcepts by @gmou3 in #38613
• some pep8 fixes in combinat/designs by @fchapoton in #38614
• permgroup_element.pyx: add some consts by @gmou3 in #38615
• structure/sage_object.pyx: remove excess %ss by @gmou3 in #38616
• Re-add py3.9 support to sage_autodoc.py by @kiwifb in #38619
• cleaning the deprecation and removal of NoetherianRing class by @fchapoton in #38620
• switch from genbg to genbgL in nauty_genbg to generate larger bipartite graphs. by @dcoudert in #38621
• pep8 fixes in schemes/toric by @fchapoton in #38622
• Fix issue report formatting by @vincentmacri in #38624
• Remove outdated setting of sphinx_source_suffix by @mkoeppe in #38625
• Require weaker Sphinx dependency for sagelib by @tobiasdiez in #38627
• Fix hypellfrob.pyx calling Python inside sig_on by @vbraun in #38628
• fixing most ruff PERF4 warnings in combinat by @fchapoton in #38635
• fix something in quadratic forms by @fchapoton in #38636
• interface to new nauty generator for Hasse diagrams by @fchapoton in #38638
• pathlib in simplicial sets examples by @fchapoton in #38644
• add typing annotation in temporary_file by @fchapoton in #38646
• Repair sage -t --valgrind by @mkoeppe in #37569
• Fix category of ModularFormsRing and documentation cleanup by @DavidAyotte in #37821
• graphs: add implementation of slice decomposition via an extended LexBFS algorithm by @cyrilbouvier in #38299
• Implement EllipticCurve_with_prime_order() constructor by @JosePisco in #38341
• add method is_edge_cut to graphs by @dcoudert in #38435
• build/pkgs/cython: Update to 3.0.11 by @mkoeppe in #38501
• build/pkgs/jupyter_jsmol: Change to optional by @mkoeppe in #38532
• some details in strassen.pyx by @fchapoton in #38539
• Fixes in pyx files by @fchapoton in #38542
• build/pkgs/pip 24.2, setuptools 73.0.1 etc. by @mkoeppe in #38548
• build/pkgs/python3: Update to 3.12.5 by @mkoeppe in #38558
• Right align sage/python tabs and alter vertical spacing by @thecaligarmo in #38568
• build/pkgs/primecount 7.14, primesieve: 12.4 by @mkoeppe in #38571
• README.md, src/doc/en/installation: Replace release tours links by @mkoeppe in #38581
• Add missing commit when building large Cremona database by @jamesjer in #35050
• New algorithms to compute the characteristic polynomial of the Frobenius endomorphism of a Drinfeld module by @kryzar in #38174
• Implemented generators for some small graphs/ digraphs by @janmenjayap in #38321
• fix ruff PLR1730 checks by @GiacomoPope in #38540
• Add subs method for function field elements by @vincentmacri in #38607
• some fixes for E241 by @fchapoton in #38641
• fixing some mypy suggestions in algebras and abvar by @fchapoton in #38647
• Fix all three CONDA ci failing tests by @fchapoton in #38649
• get rid of sage-eval in dokchister.py by @fchapoton in #38653
• simplifications in some libgap calls by @fchapoton in #38660
• graphs: make init_short_digraph always sort neighbors but without the extra log complexity (2nd try) by @cyrilbouvier in #38664
• some care for pep8 E203 in pyx files by @fchapoton in #38666
• Fix pyproject.toml use of inline tables by @vbraun in #38667
• Remove giac integration from GiNaC by @orlitzky in #38669
• cythonize the chain polynomials of posets by @fchapoton in #38674
• Fix matrix coercion with numpy 2.1 by @antonio-rojas in #38683
• Fix broken coverage ci by @kwankyu in #38687

New Contributors

• @jamesjer made their first contribution in #35050

Full Changelog: 10.5.beta3...10.5.beta5