0.25

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #736
• FIX: Add environment argument to TaskBase._run_task() and Workflow subclass by @ghisvail in #739
• Handle None types by @tclose in #742
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #747
• ENH: Add more complete format string implementation for argstrings by @tclose in #754
• added nest_asyncio to install requires by @tclose in #501
• Special handling of bytes_repr for mock filesets by @tclose in #743
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #753
• fixes issues with super->sub-class auto-cast and handles MultiInputObj coercion by @tclose in #746

Full Changelog: 0.23...0.25

0.24

Merge pull request #746 from nipype/typing-bugfixes

fixes issues with super->sub-class auto-cast and handles MultiInputObj coercion

0.23

What's Changed

• FIX: Type error in blocking task list, detailed exception message by @tclose in #623
• REF: More detailed runtime checks for input spec by @ghisvail in #627
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #628
• FIX: Provide templated fields to cmdline only when requirements are met by @ghisvail in #629
• FIX: Allow any iterable for ShellOutSpec requires by @ghisvail in #631
• FIX: Allow staticmethod be passed to callable metadata in ouput spec by @ghisvail in #632
• CI: Add dependabot config by @ghisvail in #633
• Build(deps): Bump actions/setup-go from 2 to 4 by @dependabot in #635
• Build(deps): Bump actions/checkout from 2 to 3 by @dependabot in #636
• Build(deps): Bump actions/setup-python from 2 to 4 by @dependabot in #637
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #639
• STY: Miscellaneous cleanups by @effigies in #645
• No need for ignore words file now, also ignore afile by @yarikoptic in #678
• MNT: Drop Python 3.7 support by @effigies in #669
• Type checking and coercion by @tclose in #662
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #666
• DOC: Fix linkcode resolving for attrs-defined classes by @ghisvail in #685
• Fix DaskWorker and add GitHub Actions workflow for Dask tests by @adi611 in #686
• Update Slurm container image in GitHub Actions workflow by @adi611 in #688
• Bump actions/checkout from 3 to 4 by @dependabot in #695
• Typing bugfixes by @tclose in #687
• Omit false output templates by @tclose in #693
• Added handling of hashing of types with args and typing special forms by @tclose in #684
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #699
• adding cache_dir to tests by @djarecka in #704
• Env by @djarecka in #705
• Update DOCKER_IMAGE tag in testslurm.yml by @adi611 in #697
• Env by @djarecka in #706
• Update .zenodo.json by @adi611 in #707
• Draft: Adding new worker which uses PSI/J to run tasks by @adi611 in #694
• adding the Singularity environment class by @djarecka in #711
• [WIP] cleaning, fixing tests by @djarecka in #718
• small fix by @djarecka in #721
• small edits to the core by @djarecka in #722
• Bump actions/setup-python from 4 to 5 by @dependabot in #726
• Bump actions/setup-go from 4 to 5 by @dependabot in #725
• NF: Add Environment class, with initial Native/Docker implementations by @effigies in #516
• Bump actions/download-artifact from 3 to 4 by @dependabot in #727
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #728
• pre-commit updates and code fixes by @pre-commit-ci in #712
• Test with Python 3.12 by @ghisvail in #730
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #731
• Permit superclass to subclass lazy typing by @tclose in #696
• BYO worker by @tclose in #733
• Bugfix for optional output template files (i.e. of type Union[Path, bool]) when set to False by @tclose in #709
• Hash change guards by @tclose in #698
• Caching of file-set hashes by local path and mtimes by @tclose in #700
• use exist_ok instead of explicit check for path exists when creating hash cache so it is multiprocess safe by @tclose in #735
• updating to new version of auto by @djarecka in #738
• Add note instead of catching and raising unhashable exception by @tclose in #734

New Contributors

• @dependabot made their first contribution in #635
• @yarikoptic made their first contribution in #678
• @adi611 made their first contribution in #686

Full Changelog: 0.22...0.23

0.23 Alpha

Motivation

Pre-release of type-checking/hashing changes (see #662) to allow them to be accessed from PyPI so a new version of Arcana can be released. A full release will be made once #682, #681, #683 have been addressed.

What's Changed

• #662 - Type-checking/coercion; switch to use fileformats; more robust inputs hashing using functools.singledispatch (can handle sets)
• #623 - List blocked tasks in error message when upstream nodes are not accessible due to hashing issues
• #629 - FIX: Provide templated fields to cmdline only when requirements are met
• #631 - FIX: Allow any iterable for ShellOutSpec requires
• #636 - Build(deps): Bump actions/checkout from 2 to 3
• #637 - Build(deps): Bump actions/setup-python from 2 to 4
• #639 - [pre-commit.ci] pre-commit autoupdate #639
• #645 - STY: Miscellaneous cleanups
• #678 - No need for ignore words file now, also ignore afile
• #669 - MNT: Drop Python 3.7 support

Full Changelog: 0.22...0.23a0

0.22

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #608
• MNT: Add git-archive support for setuptools_scm by @effigies in #609
• CI: Enable testing for Python 3.11 on Windows by @ghisvail in #612
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #618
• ENH: Add support for argstr formatting of any iterable by @ghisvail in #614
• Add support for arbitrary mappings in a FunctionTask by @ghisvail in #565

Full Changelog: 0.21...0.22

0.21

What's Changed

• WIP-Adding software version retrieval by @rcali21 in #580
• Working on adding entity_message by @rcali21 in #593
• MNT: Migrate project to flit-scm by @ghisvail in #597
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #599
• FIX: Enable testing with Python 3.11 by @ghisvail in #601
• MNT: Prerelease updates by @effigies in #602
• use cache_dir instead of output_dir by @montesmariana in #538
• Graph test by @djarecka in #603
• Handling input fields checking for Mandatory and Mutually exclusive fields by @ablachair in #595
• moving tests with xor to test_shelltask_inputspec.py by @djarecka in #604

New Contributors

• @montesmariana made their first contribution in #538
• @ablachair made their first contribution in #595

Full Changelog: 0.20...0.21

0.20

What's Changed

• Use inspect.getfullargspec instead of getargspec by @ghisvail in #568
• Make Makefile compatible with macOS by @ghisvail in #567
• Fix bug in inputs checksum before/after task run when deeply modifying objects by @tclose in #571
• [FIX] Enable Workflow constructor to receive SpecInfo objects for input_spec parameter by @NicolasGensollen in #573
• WIP: adding task input info by @rcali21 in #556
• Update zenodo by @rcali21 in #578
• [ENH] Add _graph_checksums to input_spec if missing by @NicolasGensollen in #584
• changing sinngularity images by @djarecka in #589
• Provide paths to ShellTask output files by @tclose in #585
• Improve reporting of crash report location by @ghisvail in #564
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #551
• More descriptive debugging graph errors and bugfix in values validator by @tclose in #581
• fixing typo by @djarecka in #591
• adding an Attribute Error to the exception for get_value by @djarecka in #592

New Contributors

• @ghisvail made their first contribution in #568
• @NicolasGensollen made their first contribution in #573
• @rcali21 made their first contribution in #556

Full Changelog: 0.19...0.20

0.19

What's Changed

• MNT: Require cloudpickle >= 2.0 by @effigies in #517
• updating test pydra GA by @djarecka in #519
• TST: Decrease divergence between Task/Workflow _run_task by @mgxd in #518
• simplifying ShellCommandTask.cmdline by @djarecka in #520
• Use functools.wraps in task decorator by @tclose in #533
• RF: Submitter logic. by @mgxd in #524
• changed to sge/slurm checks, moving to utils by @djarecka in #537
• disabling etelemetry for testing by @djarecka in #542
• DOC: Use effigies fork of sphinxcontrib-versioning by @effigies in #544
• removing res.output.stderr from docker tests by @djarecka in #543
• Split command line using quote respecting shlex.split instead of ' '.split by @tclose in #545
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #534
• function in output_file_template by @djarecka in #553
• allow more output types to use callables by @yibeichan in #557

New Contributors

• @yibeichan made their first contribution in #557

Full Changelog: 0.18...0.19

0.18

What's Changed

• Rf/state by @djarecka in #499
• added filename to FileNotFoundError messages by @dafrose in #504
• fixing two tests by @djarecka in #514
• removing teststyle GA, we are using pre-commit by @djarecka in #515
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #511

New Contributors

• @dafrose made their first contribution in #504

Full Changelog: 0.17...0.18

0.17

What's Changed

• Rerun errored by @chasejohnson3 in #483
• adding a default name for shell tasks by @djarecka in #485
• reverting adding absolute_path by @JW-96 in #489
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #490
• [fix] bringing back fname_presuffix and fixing copyfiles functions by @djarecka in #494
• Ci/ci and pre-commit updates by @djarecka in #493
• changing repo for sphinxcontrib-versioning by @djarecka in #495
• [FIX] Gracefully handle empty input_spec arg passed to Workflow init by @tclose in #497
• Prevent recursive attr->dict conversion of FunctionTask inputs by @tclose in #503
• Sun Grid Engine: SGEWorker by @chasejohnson3 in #472
• Fixes SerialWorker Implementation by @tclose in #507

New Contributors

• @pre-commit-ci made their first contribution in #490
• @tclose made their first contribution in #497

Full Changelog: 0.16.2...0.17