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Update develop-ref after #2133 #2138
Commits on Oct 26, 2021
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Per #1906, modify code to pass entire path to make_temp_file_name ins…
…tead of only the filename so that the function can tell whether or not the file exists. (#1952) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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Commits on Nov 3, 2021
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Feature 1761 percent thresh (#1956)
* Per issue #1761 in set_perc() adding code to get FBIAS numeric value, like 1.0 or 0.9, etc. SL * Per issue #1761: in set_perc(), modified actual percentile calculation at end to use the extracted FBIAS numeric value (float). SL * Per issue #1761: modified the check on the perc_thresh_freq_bias, just has to be > 0 now. SL * Per issue #1761: cleaned up code in set_perc(). SL * Per #1761, updates to Simple_Node::set_perc() to handle variable frequency bias amounts. Changes include: - Reverting the formatting of this back to how it originally was in the develop branch. In general, just match the formatting of the existing file, so as the minimize the number of difference lines. - Add logic to adjust the percentile to be found based on the requested FBIAS value. Multiplying or dividing the percentile by the FBIAS value depends on the inequality type and whether we're bias adjusting the forecast or observation data. - Adjust the log messages slightly. Please be aware that I'm not totally confident in these changes. They warrant much more testing. This logic is very, very confusing. * Per #1761, call compute_percentile() when double-checking the percentile values. * Per #1761, remove unused variable. * Per #1761, add warning for percentiles > 100. * Per #1761. In set_perc(), after testing cleaned up code. SL * Per issue #1761: adding new config file for testing dynamic FBIAS values. SL * Per issue #1761: added new unit test for dynamic FBIAS values when running grid_stat. SL * Per issue #1761, modified FBIAS section to indicated that the user can use dynamic values that are not 1.0. SL * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Per issue #1761, set nc_pairs_flag = FALSE. SL Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
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Hotfix after merging changing for #1761. Updating the list of expecte…
…d output files.
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Per #1905, committing a hotfix directly to the develop branch. Revert…
…ing the logic for computing the ensemble range back to what it was previously. The new version produced very slight differences in the 6-th or 7-th decimal place when compared to previous results. There's not good reason for these changes which were caused by the order of operations in casting from doubles to floats. Reverting back to the old logic prevents diffs for anyone else downstream and is the prudent choice.
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Commits on Nov 4, 2021
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Hotfix for the develop branch to get met-10.1.0-beta4 compiling on WC…
…OSS. The intel compiler does not allow adjacent >> characters when defining maps.
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Updating the beta4 release date from 11/16 to 11/17 since the beta4 r…
…elease needs to be recreated.
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Commits on Nov 19, 2021
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Commits on Nov 29, 2021
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#1936 Excludes precip3hr, precip6hr, precip12hr, and precip10min from…
… required variables for MESONET
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Commits on Dec 1, 2021
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Per #1985, correcting typo found while creating V10.0.1 in the develo…
…p branch as well.
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Per #1985, VERY minor change to fix alignment of titles in Point-Stat…
…... updating the develop branch.
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#1936 Added an unit test for newer MESONET file
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Commits on Dec 2, 2021
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Merge pull request #1984 from dtcenter/feature_1936_madis_nc2
Bugfix 1936 develop madis2nc
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Commits on Dec 13, 2021
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Commits on Dec 28, 2021
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#1844 Added vx_pointdata_python
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#1844 Added vx_pointdata_python to PYTHON_LIBS & make file for vx_poi…
…ntdata_python
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#1844 Added vx_pointdata_python to SUBDIRS
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#1844 Added met_point_data.cc & met_point_data.h
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#1844 NcHeaderData is renamed to MetPointHeader and moved to met_poin…
…t_dataq.h
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#1844 NcPointObsData is derived from MetPointObsData. Many methods ar…
…e moved to the base class MetPointObsData
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#1844 Moved varianbles and methods to the base class MetPointData
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#1844 override the obs_data pointer to the derived class
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#1844 Added pyobject_as_bool & pyobject_as_string_array
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#1844 Cleanup include statements and addpointdata_python.h if python …
…is enabled
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#18443 Support python embedding
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#1965 Excludes the duplicated variable names from multiple input files
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#1965 Processed with the raw variable names and update them when the …
…output is saved.
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#1965 Added unit test ioda2nc_same_input
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#1965 Processed with the raw variable names and update them when the …
…output is saved.
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#1965 Added unit test ioda2nc_same_input
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Merge pull request #2006 from dtcenter/feature_1965_ioda2nc_same_input
Feature 1965 ioda2nc same input
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Update the development environment for seneca to add /usr/local/nco/b…
…in and /usr/local/netcdf/bin to the path. Also define MET_TEST_RSCRIPT to point to a new enough version of RSCRIPT that has the ncdf4 package 1.17 or later.
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Fixup the Rscript diffing logic to support running the nightly build …
…on seneca. The problem here is that the ncdiff -x -v command line options that worked in version 4.7.0 NO LONGER work in 4.9.2. Added a check to skip over the time_bounds variable when processing the ncdiff output.
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No real changes here. Just formatting
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Feature 1974 message_type_group_map (#1999)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Feature 1996 uninitialized variables (#2004)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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Feature 1695 ensemble single file (gen_ens_prod) (#2001)
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Feature 1965 NB faile with time summary by ioda2nc (#2008)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu>
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#1844 Added log message for use_var_id
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#1844 Get use_var_id for python embedding
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#1844 Added met_point_obs.py and read_met_point_obs.py
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#1844 Added 4 unit test for python embedding of MET point data
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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More changes to test_util.R to account for differences between 4.7.0 …
…and 4.9.2 of ncdiff. The earlier version reported 0 diffs for the time_bounds, lat, lon, latitude, and longitude variables while the newer version reports their raw values. Simply ignore these variables for now. This isn't a great solution but when we reimplement this testing logic in python, we can address this issue then.
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#1844 Added python embedding for point observation data
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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Feature 1926 gridstat openmp (#1977)
Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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Commits on Jan 14, 2022
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feature 1695 ensemble single file (ensemble_stat) (#2007)
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Committing directly to the develop branch. Removing many, many instan…
…ces of MET_BUILD_BASE and a couple instances of MET_BASE from the examples listed in Appendix A. The inconsistent use of these variables will only cause confusion. Removing them will help avoid that confusion. Big picture... MET_BASE defines the installed 'share/met' directory. It can be used to reference the location of map or polyline files. MET_BUILD_BASE is only used in the context of the test scripts. There, it's defined as the top-level source code directory in which the code was compiled. Its used to reference the location of sample data files or Rscript included in the tarball. I left a couple references to these variables in Appendix A where thier use is not confusing. But I removed all instances which are used to the define the location of the 'bin' directory. Instead, let's just assume the MET binaries are already in their path... or the user knows where to find them.
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feature 1695 fix issues with ensemble changes (#2012)
Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu>
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Hotfix for #1695 committed directly to the develop branch. The new En…
…semble-Stat config files added for this issue don't define a random number generator seed. This results in different output for each run and prevents the regression test from producing repeatable results. Defining the seed here to fix that.
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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#1844 Make met_point_obs as abstract class
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#1844 correctedb for loop end condition on processing obs bdata
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#2020 Added SonarQube related varibales
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#2015 Avoid the repeasted debug message if derived varibales are disa…
…bled
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#1996 Initialize right and left
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#1966 Call clear() instead of reset memory for Header variable
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#1966 Make sure the levels from variable does not exceed the maxLevel
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#1966 Removed unreachable codes
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#1966 Do not write into NetcDF if empty data
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Merge pull request #2010 from dtcenter/feature_1844_python_embedding
Feature 1844 python embedding
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#2015 Corrected "retained or derived" count
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Merge pull request #2024 from dtcenter/feature_2020_run_sonarqube
Feature 2020 run sonarqube
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Merge pull request #2026 from dtcenter/feature_2015_pb2nc_debug_message
fesature 2015 pb2nc repeated debug messages
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Feature 1546 CI testing (#2029)
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fixed broken workflow by setting environment variable expected for do…
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Updating develop with changes to the unit tests names. Renaming unit_…
…test.yml to a more generic testing.yml name since it compiles AND/OR runs unit tests. Also make the job names more concise so its easier to see what's running in the action summary window on GitHub.
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fixed directory to copy truth data into -- copy command was copying t…
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Per #1907, added warning about switch from Ensemble-Stat to Gen-Ens-P…
…rod (#2032) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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2028 Check null for header data
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#2028 Check if the pointer (d) is null
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#2015 Changed warning to debug message
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#2028 Passing two dimensionl cur and dim array
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Merge pull request #2035 from dtcenter/feature_2028_madis2nc_profiler_qc
Feature 2028 madis2nc profiler qc
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#2044 Renamed obs_prefbufr_map to obs_prepbufr_map (typo)
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#2044 Corrected config key for obs_prefbufr_map and give a warning fo…
…r using the old key
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CI: output summary of differences in GHA log to easily see results wi…
…thout having to download the log artifact
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#2027 ci-run-unit Changed wind thres
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Merge remote-tracking branch 'origin/develop' into feature_2027_grid_…
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#2027 ci-run-unit Increased the precision to debug message
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#2027 Increased the buffer and cheking the status of sprintf
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Merge branch 'feature_2027_grid_stat_wind_direction' of github.com:dt…
…center/MET into feature_2027_grid_stat_wind_direction
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Feature 1998 standard sections (#2038)
* fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 missed one * fixing section headers to be consistent with METplus #1998 try again * fixing section headers to be consistent with METplus #1998 I had it right the first time * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 fixing mistake * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section header underscore to dash #1998 * updating TOC vs ref 1998 * updating TOC vs ref 1998 completed * trying to fix link #1998 * trying to fix link adding reference back in #1998 * updating TOC again underscore vs dash #1998 * updating TOC again underscore vs dash #1998 * updating TOC vs ref 1998 try * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 take 2 * standardizing TOC sections #1998 take 3 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * updating questions into the TOC. test #1998 * updating questions into the TOC. #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * cleaning up questions. removing section title from questions. * adding a period #1989. * adding the line breaks back in to match other formatting within MET #1989. * Changed some "^^^" to "----" * Changed "###" to "***" Co-authored-by: jprestop <jpresto@ucar.edu>
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#2044 parse_conf_obs_bufr_map is moved to pb2nc_conf_info.c
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#2044 parse_conf_obs_bufr_map is moved to pb2nc_conf_info.c
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#2044 Changed debiug level for PBL
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#2044 ci-run-unit Give warning if bad connfig key is used
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Removing variable that was set but never used because SonarQube might complain about that, like Fortify does.
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Feature 2040 parse timing (#2048)
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Merge pull request #2047 from dtcenter/feature_2027_grid_stat_wind_di…
…rection Feature 2027 grid stat wind direction
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#2033 ci-run-test Initial release
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For #2044, fix a typo in PB2NCConfig_G212. A commented out obs_bufr_v…
…ar entry should really be obs_bufr_map and not commented out.
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Merge pull request #2050 from dtcenter/feature_2044_pb2nc_config
Feature 2044 pb2nc config
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Feature 1824 pb2nc mlcape (#2057)
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#1824 ci-run-test Reset itype to 1 for regular CAPE
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Merge pull request #2060 from dtcenter/feature_1824_pb2nc_MLCAPE2
#1824 ci-run-test Reset itype to 1 for regular CAPE
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SonarQube: check if pd_ptr is null
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#1824 Initialize cape_cnt_surface_msgs
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ci-run-test Removed trailing spaces
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Modified the PR template to add review of the source issue metadata c…
…i-skip-all
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feature_2054_helpEmailChanges (#2064)
* found and made three changes replacing met_help@ucar.edu with the MetPlus gitub discussions page * Update met/docs/Users_Guide/appendixA.rst Thanks, a typo plus I am completely neutral as to the exact wording. Co-authored-by: jprestop <jpresto@ucar.edu> * Update met/src/libcode/vx_data2d_grib2/data2d_grib2.cc Co-authored-by: jprestop <jpresto@ucar.edu> * Update met/README Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: jprestop <jpresto@ucar.edu>
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Merge pull request #2065 from dtcenter/feature_1824_pb2nc_MLCAPE2
Feature 1996 sonarqube findings
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Feature set job controls (#2066)
* Updated set_job_controls.sh to add a check for the skip all keyword * Added a space to check keyword ci-skip-all Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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#1996 simplify the retrun statement (no effect with tf_left at the se…
…cond return
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#1996 Add null terminator only if the pointer is not NULL
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#1996 Reduced duplicated for loops
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#1996 Removed IsSet which is defined at the base class
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#1996 ci-run-test Initialize the variable, nxy
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Merge pull request #2073 from dtcenter/feature_1996_sonarqube_findings2
Feature 1996 sonarqube findings
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Feature 1918 climo_ens_member_id (#2075)
* Per #1918, store the ensemble_member_id string in the EnsVarInfo class so that we can use it later, if needed, when reading climatological data which may also make use of that string. * Per #1918, update gen_ens_prod to set the MET_ENS_MEMBER_ID environment variable when reading climatology data if the ens_member_ids config option has been set and the normalizing relative to climatology has been requested. * Per #1918, add log messages to read_climo.cc and gen_ens_prod.cc to clarify what data is being read from which climo data files. * Added documentation on MET_ENS_MEMBER_ID usage in climo file name * updated usage langauge * Per #1918, adding gen_ens_prod unit test to demonstrate using ENS_MEMBER_ID to read climo data separately for each member. * Per #1918, adding gen_ens_prod unit test to demonstrate using ENS_MEMBER_ID to read climo data separately for each member. Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
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Per #1904, fixing a minor copy/paste bug in gen_ens_prod. We were che…
…cking the length of config_file instead of out_file. This became obvious when running gen_ens_prod without the -out option. That run segfaulted because it tried to create an output file using an empty string. (#2087)
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#1824 ci-run-test Separated log message for MLCAPE
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ci-run-test Do not calls set(TcrmwData *)
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Initialze obs_data at constructor to avoid warninjg on building
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Initialze obs_data at constructor to avoid a warning by compiler
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#1824 ci-run-test Removed the duplicated code
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Merge pull request #2089 from dtcenter/feature_1824_pb2nc_MLCAPE3
Feature 1824 pb2nc log message for mlcape
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Co-authored-by: davidfillmore <fillmore.winslow.david@gmail.com> Co-authored-by: rgbullock <bullock@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu>
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Hotfix to the develop branch to fix the MODE Makefile for the MET-10.…
…1.0-rc1 release.
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update job control rules for GHA testing workflow to use version spec…
…ific input data if running tests on main_v branch
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Adding SonarQube location to development.seneca file.
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Merge branch 'develop' of https://github.com/dtcenter/MET into develop
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Bugfix #2102 develop initialize modified_hdr_typ (#2104)
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu> Co-authored-by: johnhg <johnhg@ucar.edu>
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added logic to manually trigger a workflow via the GitHub… (develop) (#…
…2109) Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Feature update installation info (#2114)
* Updating configuration and modulefiles * Removed jet files
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create DockerHub tag that ends with -lite to use when triggering the …
…METplus testing workflow
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Commits on Apr 4, 2022
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Commits on Apr 6, 2022
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Feature 1950 sort station list (#2121)
* Update the top-level README file to list ioda2nc, but also to trigger GHA to run for this new main_v10.1-ref branch. * Added bool Sorted variable, set to true or false in relevant functions. Updated sort() function. SL * In parse_sid_mask(), added the line: mask_sid.sort(). SL * Per issue #1950, put in some cout statements for testing. SL * Per issue #1950, working in has() function, checking for Sort and put in initial cout's for testing. SL * Per issue #1950: Cleaned up some cout (print) statements. Left one in there that is commented out for future testing. SL * Per issue #1950: modified has() function. Added lower_bound search for sorted arrays. Left some print (cout) statements in there for further testing. SL * Per issue #1950: In has(), I commented out the print (cout) statements for time testing. SL * added logic to manually trigger a workflow via the GitHub… (#2107) * Per issue #1950, put back in some print (cout) statements for testing. SL * Per issue #1950: in has() function, experimenting using the upper_bound() search instead of lower_bound() for sorted vectors. In progress. SL * Per issue #1950: added a new has function that uses binary_search. Re-working the other has() functions related to this. SL * Per issue #1950: re-worked original has(), basically reverted back to what it was...but it's now only used for unsorted vectors or for a case insensitive search. Cleaned up. SL * Per issue #1950: in section that checks Obs Station Id in SID masking list, changed cout to a mlog (debug) statement. SL * Per issue #1950: created new mask station id list (CONUS METARs) and modified the PointStatConfig_MASK_SID config file to use this list along with the existing lists. SL * Per issue #1950: reverted back to orginal sid mask site-lists. SL * Per issue #1950: checking in this site-list that was used for testing point_stat. SL * Per issue #1950, modified and added better debugging to figure out current issue with ascii2nc. SL * Per #1950, small tweak in ascii2nc to make it slightly more efficient. After adding the new obs varable name to the end of the list, we can compute var_index direclty without needing to call StringArray::has() a second time. * Per #1950: removed mlog and cout print statements from has() functions. Cleaned up. SL * Update met/src/basic/vx_log/string_array.cc Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/src/basic/vx_log/string_array.cc Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/src/basic/vx_log/string_array.cc Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/src/basic/vx_log/string_array.cc Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/src/basic/vx_log/string_array.cc Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/src/basic/vx_log/string_array.h Co-authored-by: johnhg <johnhg@ucar.edu> * Delete SID_CONUS.txt * Delete SID_CONUS_times11.txt Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu> Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
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Commits on Apr 8, 2022
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Bugfix #2118 develop grib1_rotll (#2130)
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
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Commits on Apr 9, 2022
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Bugfix 2123 nccf valid time (#2127)
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu> Co-authored-by: johnhg <johnhg@ucar.edu>
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Commits on Apr 11, 2022
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