Changelog

Adapt dataverse module to use sqlite backend #353
Report of project or folder #333
Complete uninstallation #267
“More-change columns” #237
SQLite based database #159
Creating items in the project view #151
Displaying IRIs and units #148
create function for searchChildNumber #21
Little side project: GUI for server actions #16
Little side project: configAuthors.py #15
Two concept questions that we might discuss in future #14
Improve / change project tree #12
Ability to push data to dataverse #10
refactor(data_hierarchy): adapt datahierarchy tool to use sqlite backend #373 (jmurugan-fzj)
feat(dataverse): adapt data-verse module for new sqlite database #368 (jmurugan-fzj)
feat(data_hierarchy): implement changes for data type row #351 (jmurugan-fzj)

Fixed bugs:

Data-verse parallel uploads throws segmentation fault and crashes PASTA App #365
Scanning fails #358
Delete item from project view: incorrect #354
Scanning (3.0) #335
Changing project details (3.0) #334
Moving files inside and outside the GUI #322
Right click in project view #319
Verify database before and after Dataverse upload #312
CouchDB configuration in pasta_eln 2.3.6 #309
Qt plugin issue after new installation #308
Double-clicking on the "list" metadata field in Data Hierarchy #306
Errors during corrosion data import #302
Importing eln file 2 #296
Importing eln file #295
Install on Ubuntu 24.04 #278
Changing file names #269
Details GUI issue #253
fix(dataverse): implement fix for data-verse upload crash #366 (jmurugan-fzj)
fix(pasta_app_crash): revert the PySide6 fixed version requirement #359 (jmurugan-fzj)
fix(dataverse): implement fix for the auto-selected items in metadata UI #327 (jmurugan-fzj)
fix(dataverse): implement fix for edit-error with empty list values #326 (jmurugan-fzj)
fix(dataverse): implement fix for config revert during metadata edits #323 (jmurugan-fzj)

Closed issues:

Document data-verse module #369
test extractors does not work although the rerun extractor does #360
Form: ctrl-s -> save #356
Show that the details are hidden in project view #355
PASTA APP crashes with segmentation fault #352
tags are incorrect in form: everywhere? #342
Improve GUI of form #339
Datahierarchy editor version 2.0 #329
PASTA SQLite #328
Extractors not working #311
Python 3.12/ 3.11 requirement is too strict, relax in setup. Cfg #310
Speed up code #261
Possible update for pyside6 #247
Import of SampleDB.eln leads to segmentation fault #231
Links to samples which have a _ in the docID, do not work as links #230
test how the main form looks with groups of questions and attachments #226
Project view: how to display 2000000 entries #216
Test elabFTW import, after next consortium meeting #209
Rendering in projects #105

Merged pull requests:

docs(dataverse): correct menu path for dataverse UI #371 (jmurugan-fzj)
docs(dataverse): extend docs to include the documentation of dataverse #370 (jmurugan-fzj)
fix tuple branch in details #362 (enmar-alkhafagi)
Version 3.0: Sqlite #347 (SteffenBrinckmann)
fixed bug 253 #346 (enmar-alkhafagi)
fix bug in ContextMenu #344 (enmar-alkhafagi)
fix 322 #325 (SteffenBrinckmann)
fix issue 319 #324 (SteffenBrinckmann)

v2.6.0 (2024-07-12)

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v2.6.0b3 (2024-07-11)

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Fixed bugs:

fix(data-hierarchy): implement fix for edit-error with single list values #317 (jmurugan-fzj)

v2.6.0b2 (2024-07-10)

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Fixed bugs:

Data-verse fails to support upload in multiple user configured project groups #301
Error during eln file export when the organization list is empty #294
Opening "Dataverse Configuration" throws errors #292
Cryptography module not found #290
fix(data-hierarchy): implement fix for edit-error with empty list values #313 (jmurugan-fzj)
fix(dataverse): integrated changes for handling multiple project groups #304 (jmurugan-fzj)

v2.6.0b1 (2024-06-24)

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Implemented enhancements:

Auto-filling the "Project" field #153
Auto-filling the "link" fields #152
feat(dataverse): implement data upload history module #303 (jmurugan-fzj)
refactor(dataverse): move initialize_database to backend.py #299 (jmurugan-fzj)

Fixed bugs:

Add new projects throws errors #274
Removing information from metadata fields #268

Merged pull requests:

Temporarily block import to not cause errors #300 (SteffenBrinckmann)
Repair issue that occurs if author's organization... #298 (SteffenBrinckmann)
Changes in form do not change the filename on the disk #297 (SteffenBrinckmann)
Add cryptography to requirements #291 (SteffenBrinckmann)
Sb python3.12 #284 (SteffenBrinckmann)

v2.5.3 (2024-05-15)

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v2.5.3b1 (2024-05-15)

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Implemented enhancements:

feat(dataverse): extend metadata editor to show a save summary #287 (jmurugan-fzj)
refactor(dataverse): restructure login configuration #283 (jmurugan-fzj)
feat(dataverse): integrate actual ELN generation functionality #282 (jmurugan-fzj)
perf(dataverse): implement changes to improve multiple uploads #280 (jmurugan-fzj)
feat(dataverse): implement data upload feature #273 (jmurugan-fzj)

Fixed bugs:

Scan Project with new folder and directories, does not create folder but unidentified item #270
Issues during the corrosion data import #232
fix(dataverse): fix for check_if_dataverse_exists method failures #288 (jmurugan-fzj)
fix(dataverse): implement fix for the cancellation logic issue #281 (jmurugan-fzj)

Closed issues:

Measurements in Unidentified table #264

Merged pull requests:

clean the pytests such that my releaseScript runs successfully #289 (SteffenBrinckmann)
sign eln file #286 (SteffenBrinckmann)
Export: you have to specify what you want to export #285 (SteffenBrinckmann)
Sb eln export multiple projects #279 (SteffenBrinckmann)
Safeguard against fast form filling that does not create an autosave #277 (SteffenBrinckmann)
Sb 268 remove entries during editing #276 (SteffenBrinckmann)
Fix issue 153 #275 (SteffenBrinckmann)
Skip things that have been done before and skip folders #272 (SteffenBrinckmann)
Speed up database:getHierarchy: factor >30 #271 (SteffenBrinckmann)

v2.5.2 (2024-04-17)

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v2.5.2b2 (2024-04-16)

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Implemented enhancements:

Closing the "You will loose all new data..." warning pop-up #224

Fixed bugs:

Changing item type to "Unidentified" #255
Using “enter” to add a tag opens the extended comment field #254

Merged pull requests:

Sb 236 autosave fix #266 (SteffenBrinckmann)
Sb 232 fix also second run #265 (SteffenBrinckmann)
Bugs and features that SB found #263 (SteffenBrinckmann)

v2.5.2b1 (2024-04-12)

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Merged pull requests:

Drag drop #262 (SteffenBrinckmann)
Fix issue #255 #259 (SteffenBrinckmann)
fix the issue #254 #258 (SteffenBrinckmann)
Sb 236 make autosave more logical #257 (SteffenBrinckmann)

v2.5.1 (2024-04-05)

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Fixed bugs:

Right click on the empty project view #227
"Rerun extractors" removes shasum #220
Metadata not saved in forms #208

Closed issues:

Slow code if change of project details #144

Merged pull requests:

Sb 232 corrosion import2 #252 (SteffenBrinckmann)

v2.5.1b1 (2024-04-05)

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Fixed bugs:

CouchDB not installed on Windows #241
Removing the organization from "Author" configuration #222
ProjectView -> Edit Project -> Change name: new name not represented in left side bar #193
Project view -> edit: after form closes, the corresponding item is expanded / collapsed #191
Display of comments in views #98

Closed issues:

Check capilization in GUI: no "All Measurements" #185

Merged pull requests:

Fix #241: WIndows installation #250 (SteffenBrinckmann)
Fix #193 #249 (SteffenBrinckmann)
Fix issue #191 #248 (SteffenBrinckmann)
fix bug #208 #246 (SteffenBrinckmann)
Ignore configuration .pastaELN.json when restoring #245 (SteffenBrinckmann)
Rescale all text documents in details, when the splitter changes size #244 (SteffenBrinckmann)
debug issue #236 #243 (SteffenBrinckmann)
User prompt improvements #242 (SteffenBrinckmann)
speed up edit of project #240 (SteffenBrinckmann)
Fix #185 #227 #220 in one PR since ... #239 (SteffenBrinckmann)

v2.5.0 (2024-03-25)

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v2.5.0b8 (2024-03-25)

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Implemented enhancements:

feat(dataverse): implement upload config dialog #234 (jmurugan-fzj)

Merged pull requests:

Sb 222 remove twice #238 (SteffenBrinckmann)

v2.5.0b7 (2024-03-21)

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Implemented enhancements:

feat(dataverse-integration): implement metadata editor #211 (jmurugan-fzj)

Merged pull requests:

Fix subissue 2 of #222 #233 (SteffenBrinckmann)

v2.5.0b6 (2024-03-19)

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Implemented enhancements:

Typos #172
"Projects" button in left sidebar #150
Permanent project view #95
Improve main form #11
feat(terminology-service): implement standalone version #219 (jmurugan-fzj)

Fixed bugs:

Saving the "Author" Configuration #221
Imported eln files incorrectly displayed #204
"Hide/show all item details" works only for x1 #203
"Hide project details" results in error #202
Adding "Curated" column to the Project table view #171
"Mark item as hidden" after "Hide item details" #166

Closed issues:

Deleting a data type #207
Rerunning extractors of items with no files #206
Unidentified is not dataHierarchy: makes code simpler if it is #194
Installation of CouchDB via pastaELN Wizard not possible #182
Adding a new type leads to PASTA app crash #176
Importing items of other Data Types #143
Order of data hierarchy has to be followed in form #135
Export/import of items with the same name #126

Merged pull requests:

fix #95, fully? #225 (SteffenBrinckmann)
fix #221 and #222, since related #223 (SteffenBrinckmann)

v2.5.0b5 (2024-03-14)

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Merged pull requests:

Sb improve install #218 (SteffenBrinckmann)
debug install.workflow.github #217 (SteffenBrinckmann)
Sb speed up start #214 (SteffenBrinckmann)
Fix issue #203 #213 (SteffenBrinckmann)
fix issue #202 #212 (SteffenBrinckmann)

v2.5.0b4 (2024-03-12)

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Fixed bugs:

CouchDB connectivity issues in pasta_eln-2.4.27 #201

Merged pull requests:

Update pypi.yml #215 (srmnitc)
Prevent extractor if the table line iteem does not have a file #210 (SteffenBrinckmann)
Sb 126 items same name #200 (SteffenBrinckmann)
Sb 141 external import elab ftw #199 (SteffenBrinckmann)
Fixed issue 143: unknown items should be in the undefined group #198 (SteffenBrinckmann)

v2.4.28 (2024-03-04)

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v2.5.0b3 (2024-02-27)

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v2.5.0b2 (2024-02-27)

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v2.5.0b1 (2024-02-27)

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Implemented enhancements:

Allow user to disable / enable autosave in the configuration #184
Renaming of the Ontology editor/Questionnaires #106
feat(dataverse-integration): implement dataverse configuration dialog #196 (jmurugan-fzj)
feat(dataverse-integration): add base classes and templates #190 (jmurugan-fzj)
ci(pasta): update issue templates #175 (jmurugan-fzj)
Improve editor of documents #174 (SteffenBrinckmann)
refactor(data-hierarchy): modify textual information in UI #173 (jmurugan-fzj)
feat(dataverse-integration): implement dataverse client library #165 (jmurugan-fzj)
feat(data_hierarchy): renaming and restructuring data hierarchy tool #130 (jmurugan-fzj)

Fixed bugs:

"All items" table view opens after editing #168
Deleting projects with same names #162

Closed issues:

Displaying issues after "Rerun extractors" #167

Merged pull requests:

New version of .eln and reading sampleDB and kadi4mat files #197 (SteffenBrinckmann)
implemented feature wish #150 #195 (SteffenBrinckmann)
Repair smaller bugs that I found #189 (SteffenBrinckmann)
Issue 182: update documentation #187 (SteffenBrinckmann)
Implement improvements to the edit form #186 (SteffenBrinckmann)
Fix #168 #183 (SteffenBrinckmann)
Sb couchdb3.3.3 #181 (SteffenBrinckmann)
add organizations to author #180 (SteffenBrinckmann)
code does not crash if shortcut and/or icon does not exist in a #179 (SteffenBrinckmann)
Display issues after rerun extractors #178 (SteffenBrinckmann)
Sb less user interaction #177 (SteffenBrinckmann)
docs(data_hierarchy): adapting help page to the latest version #131 (jmurugan-fzj)

v2.4.27 (2023-12-18)

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Merged pull requests:

implement HT idea #169 (SteffenBrinckmann)

v2.4.26 (2023-12-14)

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Fixed bugs:

Using "Hide project details" raises an error #161
Data loss when changing Data Type #146
Project header moved after changing Data Type #142
Changing data types and rerunning extractors #136
Does not start in windows, reason unclear #86

Closed issues:

Confirmation popup when deleting multiple items #149
Comment display in the project view header #111

Merged pull requests:

Debug #162: Deleting projects with same names #164 (SteffenBrinckmann)

v2.4.25 (2023-12-12)

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Implemented enhancements:

Progress bar to import and export #18

Fixed bugs:

Import and edit the eLabFTW project #133

Closed issues:

Deleting an item in a specific table opens a general table #134

Merged pull requests:

Repaired issue #111 #160 (SteffenBrinckmann)
Try to repair #142 #158 (SteffenBrinckmann)
#repair issue 146 #157 (SteffenBrinckmann)
Repair issue #149 #155 (SteffenBrinckmann)

v2.4.24 (2023-11-17)

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Closed issues:

Appearance options not used from saved state #125
Removing all columns from tables #116
Importing incorrect #115
Unidentified table cannot be opened #114
Checkboxes in project table view #113
Long text in the project view header #110

Merged pull requests:

repair issue #134 #140 (SteffenBrinckmann)
if _attachment in doc prior to saving a new document, … #139 (SteffenBrinckmann)
debug unknown keys with strange values #138 (SteffenBrinckmann)
Sb redo name has to be in table #137 (SteffenBrinckmann)

v2.4.23 (2023-11-09)

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v2.4.22 (2023-11-09)

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v2.4.21 (2023-11-09)

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Fixed bugs:

Bug if branch not in doc #107
Editing unassigned items #82
Importing .eln with unidentified->measurement files #79
Creating new project after eLabFTW eln import #78

Closed issues:

Jpeg extractor issue #118
Deleting structure levels 2 and 1 #117
Edit of sample that has no project #85

Merged pull requests:

undo a recently created bug #132 (SteffenBrinckmann)
repaired #125: Appearance options not used from saved state #127 (SteffenBrinckmann)
Remove bug that occurs if you remove a project with content #124 (SteffenBrinckmann)
Sb project view x3 does not exist #123 (SteffenBrinckmann)
Sb extractor bad metadata #122 (SteffenBrinckmann)
repaired #116 #121 (SteffenBrinckmann)
Sb table bugs #120 (SteffenBrinckmann)
Repaired #110 and #111 since they belong to the same file #119 (SteffenBrinckmann)

v2.4.20 (2023-10-27)

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Merged pull requests:

Repair rendering in projects #105 #109 (SteffenBrinckmann)

v2.4.19 (2023-10-27)

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Implemented enhancements:

Improving user experience with "Visibility" options #62

Fixed bugs:

Autosaving after adding the comment #87
Changing column names in table #76
Hide in item editor #63
Button should highlight premature end of install #32

Closed issues:

Ontologie issues for Steffen #92
Heading styles in project view #84
comment in project view #36

Merged pull requests:

repair bug #107 #108 (SteffenBrinckmann)

v2.4.18 (2023-10-25)

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v2.4.17 (2023-10-25)

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Implemented enhancements:

test(ontology): added automated tests for ontology component #100 (jmurugan-fzj)

Fixed bugs:

Deleting "Comment" in Ontology editor #99
Using "Re-order" in Questionnaires #66
fix(ontology): runtime errors been thrown for flags returning NoneType #102 (jmurugan-fzj)
fix(ontology): consecutive save click throws console errors #101 (jmurugan-fzj)
repaired issue #63 #73 (SteffenBrinckmann)

Closed issues:

Cancel export eln #65
Markdown editor - heading styles #64

Merged pull requests:

- Unified comments in all views #98 #84 #104 (SteffenBrinckmann)
Implemented visibility issues mentioned in #62 #103 (SteffenBrinckmann)
Sb start windows #97 (SteffenBrinckmann)
add codespell: configuration, workflow + get it to fix found typos #96 (yarikoptic)
Honor labels from ontology in project view and change the default labels … #93 (SteffenBrinckmann)
fixed: Creating new project after eLabFTW eln import #78 #91 (SteffenBrinckmann)
Fixed: Changing column names in table #76 #90 (SteffenBrinckmann)
fixed: Autosaving after adding the comment #89 (SteffenBrinckmann)
Fixed: #88 (SteffenBrinckmann)

v2.4.16 (2023-10-13)

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Implemented enhancements:

Auto-populating IRI field of ontology editor #58
fix(ontology): deletion of structural level types & normal types #83 (jmurugan-fzj)
feat(ontology): auto-populating IRI fields of ontology editor tool #75 (jmurugan-fzj)

Fixed bugs:

Deleting Structure 0 data types in Questionnaires #68
Empty properties in Questionnaires #67
fix(ontology): introduced check for properties with empty names #80 (jmurugan-fzj)
fix(ontology): enabled auto stretch for the property table #77 (jmurugan-fzj)
repaired #36 #20 #74 (SteffenBrinckmann)
repaired #59 #72 (SteffenBrinckmann)
repaired issue #64 #71 (SteffenBrinckmann)
fixed issue #65 #70 (SteffenBrinckmann)

Closed issues:

Table view: Change columns #59
Deletion of an item in table view #57
Import of own .eln files #38
Importing the eLabFTW .eln files #37
project view header: show comment nicely #20

Merged pull requests:

Sb improve logging save view error #81 (SteffenBrinckmann)
Merging the new changes, so I can use this Branch again #9 (RaphaelRoeske)

v2.4.14 (2023-10-03)

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Fixed bugs:

Issues when minimizing/maximizing individual items in projects #56
Ontology data modification via ontology-editor throw exceptions #55
Bug: delete file if there is no file #61 (SteffenBrinckmann)

Closed issues:

Project visibility issues #35
Using recipes leads to strange response #34
Importing sleepy brain data for the workshop #31

Merged pull requests:

Minor changes to release new version, none of the edited files are part of package #69 (SteffenBrinckmann)
Repair bugs in import of data from .eln file #60 (SteffenBrinckmann)

v2.4.13 (2023-09-26)

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Implemented enhancements:

Add help button functionality to ontology editor tool #47
Ontology editor GUI changes #30
docs(ontology): add help button functionality to ontology editor tool #52 (jmurugan-fzj)

Fixed bugs:

Auto-scale the whole UI elements when resizing the ontology editor window #48
Save fails in ontology editor #42
fix(ontology): added missing initDocTypeViews invoke to save function #54 (jmurugan-fzj)
safeguard if data-label not present in default set of icons #53 (SteffenBrinckmann)
fix(ontology): auto resizing the whole ontology editor window #51 (jmurugan-fzj)
fix(ontology): save fails in ontology editor #50 (jmurugan-fzj)
Issue 34 debug #45 (SteffenBrinckmann)

Merged pull requests:

Addressed bugs reported in https://github.com/PASTA-ELN/pasta-eln/pul… #44 (SteffenBrinckmann)

v2.4.12 (2023-09-18)

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Merged pull requests:

quickFix to solve HTs installation issue #49 (SteffenBrinckmann)

v2.4.11 (2023-09-18)

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Implemented enhancements:

feat(ontology): editor GUI changes and other modifications #46 (jmurugan-fzj)
change button text-color; tab in textEdit for form #43 (SteffenBrinckmann)
Reformat gui.py to allow for easier reading #29 (SteffenBrinckmann)
ci(ontology): added pytest and coverage calculation as a workflow #27 (jmurugan-fzj)
feat(ontology): added tests for the ontology editor #23 (jmurugan-fzj)

Fixed bugs:

Changing the pasta application for the new version of ontology data #28
Bug if meta not in extractor #40 (SteffenBrinckmann)
Implement new version 3 of the ontology into the backend. #39 (SteffenBrinckmann)

Closed issues:

Text visibility #33

Merged pull requests:

Fix installation bug #26 (SteffenBrinckmann)
ci(ontology): update the myPy workflow yml file #25 (jmurugan-fzj)
Content of form is autosaved in home folder. If computer is closed wi… #22 (SteffenBrinckmann)
feat(ontology): first draft version of ontology editor #8 (jmurugan-fzj)