LORIS Release v26.0.0

This is the LORIS v26.0.0 release. It includes many major new features such as a rewritten Data Query Tool that doesn't require CouchDB and enforces permissions, preliminary OpenID Connect support, HED tag support in the EEG browser, a new scheduling module, a candidate diagnosis evolution tracker, the ability to customize the "Sex" options for candidates in LORIS, PHP 8.3 support, and multiple bug fixes and optimizations.

For the full changelog see: v25.0.2...v26.0.0

Upgrade Instructions

To upgrade LORIS from v25.0.x (previous versions should first upgrade to v25):

1. Update to the v26.0.0 version of the code.
2. Run the SQL update patch SQL/Release_patches/25.0_To_26.0_upgrade.sql.
3. Run the command make from your LORIS root directory.

What's Changed

• [Tools] Generate tables include path fix by @laemtl in #8674
• [LINST] Add .meta option to skip XIN rules by @driusan in #8714
• [candidate_list] Multiselect for visit label, site, and cohort by @charlottesce in #8730
• [candidate_parameters] Participant status - mandatory comments if not active or complete by @charlottesce in #8731
• [api] Add cohorts to project info by @driusan in #8774
• [conflict_resolver] Add description field by @charlottesce in #8845
• [DataQuery] New DQT backend implementation by @driusan in #8268
• [IssueTracker] Fix for "othersWatching" history tracking by @sanjay-thiyagarajan in #8875
• [JS] Add username/id to Loris helper object by @driusan in #8876
• [OpenID] Add OpenID Connect support to LORIS by @driusan in #8255
• [script] Add script to create a new module by @driusan in #8918
• [Core] Allow module entrypoint to be written in typescript by @driusan in #8873
• [SQL] Require test_names.Sub_group to not be null by @driusan in #8933
• [instruments] Bulk load SessionID and VisitLabel by @driusan in #8855
• [CouchDB_MRI_Importer] Remove extra argument in _getQueryForSelectedFiles by @CamilleBeau in #8947
• [NDB_BVL_Instrument] Cleanup duplicate method definition for _addMetadataFields() by @zaliqarosli in #8956
• Remove 'Scan done' field from 'Start visit' menu by @GeorgeMurad in #8955
• feat: add robots.txt file by @divyakelaskar in #8946
• [Tools] fix timepoint data problems by @xlecours in #8949
• [bvl_feedback] Update summary in real time by @CamilleBeau in #8966
• [examiner] Only show active examiner sites by @CamilleBeau in #8967
• [dataquery] New Data Query Module by @driusan in #8907
• [api/instruments] Add endpoint that allows you to add instruments to a battery by @driusan in #8868
• [New Feature] Tracking and Configuration of Candidate's Diagnosis Evolution by @jesscall in #7560
• [Brainbrowser] file_url query param by @laemtl in #8335
• [jsx] Remove DynamicDataTable by @driusan in #8993
• [Candidate_parameters] Consent status - Add NA option by @charlottesce in #8732
• [candidate_parameters] use DoB and DoD format by @CamilleBeau in #9001
• [my_preference] Add support for my_preference widgets by @driusan in #8938
• Add PHP 8.3 support by @driusan in #9019
• [Instrument List] Show Timepoint Project by @skarya22 in #9039
• [candidate] Create Sex table and remove Sex enum by @CamilleBeau in #9025
• [Instrument List] Refresh on Stage Update by @skarya22 in #9040
• [User Accounts] Site as multi select by @sruthymathew123 in #9022
• [electrophysiology_browser] Replace Physiological Annotations with Events by @jeffersoncasimir in #9032
• [htaccess] Modifies rule to allow spaces in filename when downloading files. by @racostas in #9029
• [electrophysiology_browser] Revised EEG filters + Store reference fix by @jeffersoncasimir in #9038
• [Instrument_list] Refresh on Send to DCC by @skarya22 in #9072
• [install] fix db installer host name by @maximemulder in #9107
• [electrophysiology_uploader] Add PSCID and Visit Label filters to data table by @jeffersoncasimir in #9113
• [help] fix the help widget extending over the height of a page by @shonibare in #9105
• Increase LINST instrument read buffer by @regisoc in #9117
• [dicom archive] Fix dicom archive details links by @maximemulder in #9081
• [data_release] refactoring to use data framework. by @racostas in #9051
• [candidate_profile] Fixing the display of cohorts in candidate Info card by @GeorgeMurad in #9125
• [tools/script] fix projectID issue by @kongtiaowang in #9069
• [user] Add getSites functions in User class by @CamilleBeau in #9102
• [configuration] Fix option deletion issue. by @racostas in #9121
• [electrophysiology_browser] HED Tag Support by @jeffersoncasimir in #9033
• [api_docs] add ModuleID to permission by @ridz1208 in #9145
• [NDB_Client] Allow loading images from images.loris.ca by @jeffersoncasimir in #9161
• [media] bug fix - string to int by @kongtiaowang in #9156
• [instrument_manager] Fixing error in generate_tables_sql_and_testNames tool by @AlexandraLivadas in #9157
• [electrophysiology_browser] Minor HED display modifications by @jeffersoncasimir in #9166
• [issue_tracker] null option assignee by @regisoc in #9169
• EEGVisEnabled check issue and webpack cache by @laemtl in #9159
• [imaging browser] Remove unused button by @maximemulder in #9075
• [statistics] bug fix - projectID issue by @kongtiaowang in #9170
• [Login] password reset page- missing element import by @kongtiaowang in #9171
• [Publication] Fix deletion of file when editing project by @CamilleBeau in #9181
• [Statistics] Fix checkbox places in Imaging Statistics by @miladheshmati in #9184
• [document_repository] Uploading file too large not reporting correctly #9158 - fix by @kongtiaowang in #9174
• [examiner] fix error message display format by @shonibare in #9176
• [new_profile] Site not selected when recruiting another candidate by @nicolasbrossard in #9197
• [Behavioural_QC] Display profile level feedbacks by @CamilleBeau in #9192
• [Schedule Module] add new schedule module into Loris by @kongtiaowang in #6150
• [notification] Fix sender name in email by @maximemulder in #9203
• [publication] Fix number of files in Upload tab by @CamilleBeau in #9179
• [statistics] Recruitment graph optimization by @driusan in #9196
• [Publication] Fix for auto-selecting Project in edit by @skarya22 in #9187
• [media] 413 error improperly handled #9163 - fix by @kongtiaowang in #9175
• [publication] Fix download prevention by overriding download notification function by @jeffersoncasimir in #9208
• [Publication] Fix baseurl missing from emails by @skarya22 in #9186
• Help UI fix by @laemtl in #9210
• [candidate_list] Make candidate_list use LORIS streamable binary format by @driusan in #9195
• Add to configuration server_processes_manager module by @GeorgeMurad in #9189
• [RB_files] Removed erroneous insertions in RB_physiological_file by @jeffersoncasimir in #9211
• [Acknowledgements] Fix for selecting all roles by @skarya22 in #9209
• [dicom archive] Remove superfluous newline in dicom archive view details by @maximemulder in #9214
• data_dictionary_builder.php unique constraint fix by @laemtl in #9201
• [behavioural_qc ] Auto-open behavioural panel with query parameter by @jeffersoncasimir in #9183
• [examiner] Adds permission check when adding examiner to site. by @racostas in #9188
• [Settings] Cache settings after first retrieval by @driusan in #9216
• [dataquery] Share cache of module dictionary across queries by @driusan in #9217
• Survey Module Validation Fix by @sruthymathew123 in #9116
• Improve webpack configuration by @maximemulder in #9225
• [dictionary] Fix loading of dictionary module by @driusan in #9227
• [instrument] Fix data type of getCandID function by @driusan in #9228
• Fix webpack compilation of JS modules by @maximemulder in #9231
• [dataquery/dictionary] Add option to display enums as either value or field in dataquery module by @driusan in #9224
• [RB_files] Sampling frequency updated in RB_physiological_parameter_file.sql by @jeffersoncasimir in #9241
• [new_profile] Make list of available projects user dependent by @ridz1208 in #9236
• [dashboard] Add project filter for tasks widget by @CamilleBeau in #9220
• [statistics] Fix timeseries graph spline bug by @jeffersoncasimir in #9257
• [form + mri_violations] Add DatetimeElement to filter fields by date and time by @maximemulder in #9190
• [Login] Add login suggestion and redirection for error 403 by @maximemulder in #9041
• [Acknowledgment] Fix awkward language in citation policy placeholder #9246 - modify text by @kongtiaowang in #9269
• [score_instrument] use getInstanceData to get the instrument data by @driusan in #9263
• [media] ajax function has been removed by @kongtiaowang in #9282
• [conflict_resolver] Rename TableName to TestName by @CamilleBeau in #9270
• [electrophysiology_browser + RB_files + SQL] Rename physiological parameter for chunks path by @jeffersoncasimir in #9275
• [imaging_uploader] Invalid log message shown for uploads with status … by @nicolasbrossard in #9278
• [tools] Refactor recreate_conflicts.php to use getInstrumentNamesList() by @ay-bh in #9280
• [imaging_uploader] Make auto-launch info popup modal by @nicolasbrossard in #9287
• [media] Remove instrument autoselect by @CamilleBeau in #9288
• [EEG] Montage color map by @laemtl in #9273
• [media] fixes permissions. Allows media_read to download, renames "Delete" to "Hide". by @racostas in #9222
• [statistics] Do not depend on instrument table for queries by @driusan in #9252
• [imaging uploader] fixing upload a large file frozen by @kongtiaowang in #9289
• [EEG Uploader] User messaging and Documentation update by @laemtl in #9296

New Contributors

• @divyakelaskar made their first contribution in #8946
• @SantiagoTG made their first contribution in #8559
• @maximemulder made their first contribution in #9066
• @ay-bh made their first contribution in #9280

Full Changelog: v25.0.2...v26.0.0