Clúster: Don Clusterio software

El software de Don Clusterio.

Lista de software instalado en Don Clusterio orientado a neuroimagen, ciencia y utilidades en Linux.

• El manejador de jobs de Don Clusterio es gracias a SGE (Some Grid Engine).
• Algunos de estos paquetes se instalaron con deb-get. ¡Es la onda!.

Academy/office software

Package Name	Description
Mrtrix	Tools to perform diffusion MRI analyses
mrview	Mrtrix MRI viewer.
fsl	Library of analysis tools for FMRI, MRI and DTI.
fsleyes	FSL MRI viewer.
freesurfer	Neuroimaging toolkit for processing, analyzing, and visualizing human brain MRI
Afni	Analysis and display of multiple MRI modalities (FMRI, MRI and DTI).
MRIcroGL	MRI viewer.
DSI studio	Tractography software tool
Matlab	Programming language that expresses matrix and array mathematics directly.
rstudio	Professional software for data science teams.
VScode	Code editing. Redefined.
Singularity	Container platform
gitkraken	Intuitive Git GUI & powerful Git CLI.
Onlyoffice	Free desktop office suite for document editing and collaboration.
Sejda	Easy, pleasant and productive PDF editor.
parcellite	Clipboard manager.
zotero	A free, easy-to-use tool to help you collect, organize, cite, and share research.
inkscape	Draw and create vector graphics.
rocketchat	Official Desktop Client for Rocket.Chat.
zoom	Video Conferencing, Cloud Phone, Webinars, Chat, Virtual Events.

Nota: El python default en el cluster es python3 que trae matplotlib y numpy instalados. Si requieres tus propios ambientes te recomendamos revisar Anaconda.

GUI software

Package Name	Description
Brave	Browse privately. Search privately. And ditch Big Tech.
Google chrome	Fast, Secure Browser from Google.
bitwarden	Open Source Password Manager.
keepassxc	Cross-Platform Password Manager.
shutter	Screenshot program.
x2go	Access a graphical desktop via web.
vlc	Plays most multimedia files

CLI softare

Package Name	Description
xterm	Old school terminal emulator.
tilix	Terminal emulator with tabs.
terminator	Terminal emulator with tabs and broadcast.
Byoubu	Window manager and terminal multiplexer.
bat	A 'cat' clone with wings.
duf	Disk Usage/Free Utility - a better 'df' alternative.
fd	A simple, fast and user-friendly alternative to 'find'.
lsd	The next gen 'ls' command.
micro	A modern and intuitive terminal-based text editor.
vim	Highly configurable text editor.
rclone	Syncs your files to cloud storage.
ssh	Connectivity tool for remote login.
wget	Package for retrieving files using HTTP, HTTPS, FTP and FTPS.
htop	Interactive process viewer.
nvtop	A (h)top like task monitor for AMD and NVIDIA GPUs.
pandoc	A universal document converter.
imagemagick	Create, edit, compose, or convert digital images.
git	Distributed version control system.
tree	Utility to display a tree view of directories.
parallel	Tool for executing jobs in parallel.

Pendientes de instalar

Package Name	Description
ants	Advanced Normalization Tools
itk-snap	Software application used to segment structures in 3D medical images.
Fiji	ImajeJ with many useful plugins