2020.13+shiny

[javierggt]

This replaces #490. I'm doing this because I have some sanity checks that require branches and releases to have the same names (or very similar), and version strings to follow a standard format, for automated building. The actual number of the release can be changed.

Code changes

ska3-matlab

New Packages

• aca_hi_bgd: 0.1.4
• aca_weekly_report: 0.1.3
• acispy: 2.0.1.dev12+gc5410da
• perigee_health_plots: 0.1.2
• ska-sphinx-theme: 1.2.dev0
• ska.report_ranges: 0.4.0
• skare3_tools: 1.0.1

Removed Packages

• jplephem
• tables3_api

Updated Packages

aca_view: 0.3.0 -> 0.4.0 (0.3.0 -> 0.4.0)

• PR 45: Add documentation directory
• PR 46: Moved docs sources to another directory
• PR 52: Shiny workflow update
• PR 53: Shiny workflow update
• PR 55: Unified documentation style
• PR 56: Shiny-related changes and other small things

acdc: 4.5.0 -> 4.7.0 (4.5.0 -> 4.6.0 -> 4.7.0)

• PR 51: Add 5-year plots of relevant quantities
• PR 50: Rearrange README and add docs on excluding SRDC's
• PR 52: Remove flake8 checking on f-string with no values
• PR 53: Add 2020:145 safe mode to annotated plot
• PR 54: Shiny workflow update
• PR 55: Shiny workflow update
• PR 57: Update flake8 check to use py38
• PR 58: Fixes for shiny
• PR 56: Add a summary page and relocate to public web

acis_taco: 4.1.0 -> 4.2.0 (4.1.0 -> 4.2.0)

• PR 15: Setting up automated builds
• PR 16: SHINY: Use legacy np printoptions for regression consistency
• PR 17: Shiny workflow update
• PR 18: Shiny workflow update
• PR 19: Changes for Python 3 and matplotlib deprecations
• PR 20: Updates for matplotlib 3.2

acis_thermal_check: 3.0.0 -> 3.2.1 (3.0.0 -> 3.1.0 -> 3.2.0 -> 3.2.1)

• PR 27: Documentation for acis_thermal_check
• PR 31: Add an extra FP limit at -109 C, change FP SENS limit

acisfp_check: 3.0.0 -> 3.2.0 (3.0.0 -> 3.1.0 -> 3.2.0)

• PR 24: Changes for ACIS-S observations to -109 C, track ECS observations in the science orbit and catch violations
• PR 23: Replace recarray item access with Table item access
• PR 25: Shiny workflow update
• PR 26: Shiny workflow update

agasc: 4.8.1 -> 4.10.1 (4.8.1 -> 4.9.0 -> 4.10.0 -> 4.10.1)

• PR 43: Shiny workflow update
• PR 44: Shiny workflow update
• PR 46: Unified documentation style
• PR 48: added magnitude estimation (formerly known as mag-stats)
• PR 50: Nicer documentation including AGASC catalog description
• PR 51: Skip the mag supplement tests when no mags in supplement
• PR 53: Remove UserWarning on no mag table in supplement
• PR 52: Update supplement MAG_ACA_ERR test

annie: 0.10.1 -> 0.11.0 (0.10.1 -> 0.11.0)

• PR 101: SHINY: Pass tests
• PR 102: Shiny workflow update
• PR 103: Shiny workflow update
• PR 105: Unified documentation style
• PR 107: added docs workflow
• PR 106: Doc fixes

backstop_history: 1.1.3 -> 1.2.0 (1.1.3 -> 1.2.0)

• PR 10: Shiny workflow update
• PR 11: Shiny workflow update
• PR 9: SHINY: migrate from Chandra.cmd_states / Ska.ParseCM to kadi
• PR 13: Changes to accomodate NLET events in normal, too and maneuver only loads

chandra.cmd_states: 3.15.1 -> 3.16.0 (3.15.1 -> 3.15.2 -> 3.16.0)

• PR 49: Setting up automated builds
• PR 48: Make namespace package native
• PR 52: Version for shiny
• PR 54: Ignore warnings
• PR 55: Updates for shiny
• PR 56: Ignore Ska.ParseCM warning in testing
• PR 57: Shiny workflow update
• PR 58: Shiny workflow update
• PR 59: Warn on use of sybase to get cmd_states
• PR 61: Set interrupt_loads to shorten timelines only as short as zero length
• PR 62: Unified documentation style

chandra.maneuver: 3.7.2 -> 3.8.0 (3.7.2 -> 3.7.3 -> 3.8.0)

• PR 17: Setting up automated builds
• PR 16: Make namespace package native
• PR 18: Version for shiny
• PR 19: Ignore expected warnings in pytest
• PR 20: Shiny workflow update
• PR 21: Shiny workflow update
• PR 23: Unified documentation style

chandra.time: 3.20.4 -> 4.0.0 (3.20.4 -> 3.20.5 -> 3.20.6 -> 4.0.0)

• PR 38: Setting up automated builds
• PR 37: Make namespace package native
• PR 39: Fix the location of the C extension
• PR 40: Allow setup.py --version to work without Cython
• PR 44: Version for shiny
• PR 43: Migrate pydocs sphinx docs to project
• PR 42: Support CxoTime in DateTime and modernize
• PR 45: Flake8
• PR 46: Change so date like 2020:001 is midnight not noon
• PR 47: Disable automatic astropy.iers downloads
• PR 48: Shiny
• PR 49: Shiny workflow update
• PR 50: Shiny workflow update
• PR 52: Unified documentation style

chandra_aca: 4.29.1 -> 4.31.0 (4.29.1 -> 4.30.0 -> 4.31.0)

• PR 95: Fixed bug in decom of imgstat. It must be an unsigned int.
• PR 99: Shiny tests
• PR 90: Add PIXTLM and BGDTYP
• PR 100: Shiny workflow update
• PR 101: Shiny workflow update
• PR 104: Migrate transforms here and make them work for N-d inputs
• PR 105: Unified documentation style
• PR 107: Remove check that interval is just one obsid (for obc sol)
• PR 106: Use modern vectorized Quaternion
• PR 108: Support calculating and plotting planet positions

cxotime: 3.1.1 -> 3.2.3 (3.1.1 -> 3.2.0 -> 3.2.1 -> 3.2.2 -> 3.2.3)

• PR 4: Setting up automated builds
• PR 6: SHINY: always use UTC scale for DateTime formats + other improvements
• PR 7: Shiny
• PR 8: Improve the documentation
• PR 9: Allow for CxoTime() to get current time in date format
• PR 10: Shiny workflow update
• PR 11: Shiny workflow update
• PR 13: Faster guessing of CxoTime-specific formats
• PR 17: Add flake8 checking workflow
• PR 14: Unified documentation style
• PR 15: Much faster parsing in CxoTime and add maude format
• PR 21: Copy changes from astropy. Fixes issue Convert pip build.sh scripts to setup.py #20 (C99 mode)
• PR 16: export astropy units and TimeDelta within cxotime
• PR 22: Remove an extra underscore in PyInit declaration
• PR 23: Fix incompatibility with DateTime init with None

dea_check: 3.0.0 -> 3.1.0 (3.0.0 -> 3.1.0)

• PR 23: New 1DEAMZT model in July 2020, uses evolve_method = 2

find_attitude: 3.3.2 -> 3.4.0 (3.3.2 -> 3.4.0)

• PR 11: Setting up automated builds
• PR 12: Shiny workflow update
• PR 13: Shiny workflow update
• PR 15: Unified documentation style

hopper: 4.4.1 -> 4.5.0 (4.4.1 -> 4.5.0)

• PR 17: Setting up automated builds
• PR 18: Shiny workflow update
• PR 19: Shiny workflow update

kadi: 5.0.1 -> 5.4.0 (5.0.1 -> 5.1.0 -> 5.2.0 -> 5.3.0 -> 5.4.0)

• PR 159: Fix test to run on Windows
• PR 162: Improve get_cmds_from_backstop
• PR 161: Add acisfp_setpoint state
• PR 163: Add inclusive_stop kwarg to get_cmds
• PR 164: Allow start and stop in get_states() with cmds
• PR 165: Fix flake8 issues
• PR 166: SHINY: update dates for Chandra.Time 4.0+
• PR 167: SHINY: remove all dependencies on Chandra.cmd_states and Ska.ParseCM
• PR 169: Change default remove_starcat to False
• PR 168: SHINY: add times to states and commands outputs
• PR 170: Add helpers for compatibility with legacy commands / states code
• PR 173: Fix async problem of event query within Jupyter notebook
• PR 175: Shiny
• PR 176: Fix continuity and states for start within maneuver
• PR 188: Shiny workflow update
• PR 191: Shiny workflow update
• PR 190: Migrate cmds.h5 idx column from 16 to 32 bits
• PR 193: Unified documentation style
• PR 194: Use $SKA/data/mpcrit1 not /data/mpcrit1

maude: 3.3.1 -> 3.4.0 (3.3.1 -> 3.3.2 -> 3.4.0)

• PR 20: Setting up automated builds
• PR 21: Update regression test to reflect new MAUDE FLIGHT processing
• PR 22: setting token for authentication
• PR 23: SHINY: update test times for Chandra.Time 4.0+
• PR 24: Shiny workflow update
• PR 25: Shiny workflow update
• PR 27: Unified documentation style

mica: 4.21.1 -> 4.23.0 (4.21.1 -> 4.21.2 -> 4.22.0 -> 4.23.0)

• PR 221: Recast dark cal image to native byte order
• PR 222: Change sybase skip test to check for more restrictive vv creds
• PR 223: Use github token authentication in workflow
• PR 225: Remove tables3_api imports
• PR 226: Updates for passing tests on shiny
• PR 224: test_get_l0_images ends up trying to load mica/archive/asp1/archfiles…
• PR 227: Remove use of Chandra.cmd_states
• PR 230: Shiny
• PR 231: More shiny fixes
• PR 233: Use q_att_raw for ASPSOL quaternions if available
• PR 234: Shiny workflow update
• PR 235: Shiny workflow update
• PR 240: Unified documentation style
• PR 244: Don't throw error if there is more than one log (more than one aspect interval)
• PR 245: removed outdated documentation section
• PR 246: added docs workflow
• PR 80: Add the list of obsids that are bad for trending to the project
• PR 242: Remove warning when account doesn't have axafvv access
• PR 236: Toss the centroid dashboard code into mica
• PR 248: Fixes for asp1 processing
• PR 247: Add mod to be able to get 8x8 images in aca_l0.get_slot_data

proseco: 4.8.1 -> 4.9.0 -> 4.10.0 (4.8.1 -> 4.10.0)

• PR 326: Fix a documentation link
• PR 327: Update flake8 checking for recent version of flake8
• PR 317: Fixes for shiny Ska3
• PR 328: Add monitors and target_offset attributes to ACACatalogTable
• PR 332: Fix inadvertent re-use of base class allowed_kwargs
• PR 333: Remove defunct thumbs_up property
• PR 334: Set to use 3.8 in flake8 check
• PR 331: Add include/exclude of fids by index/id
• PR 335: Shiny workflow update
• PR 336: Shiny workflow update
• PR 343: Fix allowed_kwargs test after Update acisops/acis_thermal_check to acis_thermal_check version 3.0 #331
• PR 341: Update to use chandra_aca versions of radec_to_yagzag, and yagzag_to_radec
• PR 344: Add img_size guide parameter to control guide star image readout size
• PR 339: Unified documentation style
• PR 348 (jconnelly): Update penalty limit from -8.1 to -7.5C

pyyaks: 4.4.2 -> 4.5.0 (4.4.2 -> 4.5.0)

• PR 12: SHINY: fix test to pass with modern pytest
• PR 13: Shiny workflow update
• PR 14: Shiny workflow update

quaternion: 3.5.2 -> 3.6.0 (3.5.2 -> 3.6.0)

• PR 29: Shiny workflow update
• PR 30: Shiny workflow update
• PR 32: Add rotate_x_to_vec class method (from Ska.quatutil)
• PR 33: Unified documentation style

ska.arc5gl: 3.1.3 -> 3.1.5 (3.1.3 -> 3.1.4 -> 3.1.5)

• PR 8: Setting up automated builds
• PR 7: Make namespace package native
• PR 9: Shiny workflow update
• PR 10: Shiny workflow update
• PR 12: Unified documentation style

ska.astro: 3.2.3 -> 3.3.0 (3.2.3 -> 3.2.4 -> 3.3.0)

• PR 8: Setting up automated builds
• PR 7: Make namespace package native
• PR 9: Shiny workflow update
• PR 10: Shiny workflow update
• PR 12: Unified documentation style

ska.dbi: 4.0.1 -> 4.1.0 (4.0.1 -> 4.0.2 -> 4.1.0)

• PR 15: Setting up automated builds
• PR 16: Fix / improve tests to run on Windows
• PR 14: Make namespace package native
• PR 17: Version for shiny
• PR 18: Shiny workflow update
• PR 19: Shiny workflow update
• PR 21: Unified documentation style

ska.engarchive: 4.47.4 -> 4.50.1 (4.47.4 -> 4.48.0 -> 4.49.0 -> 4.50.0 -> 4.50.1)

• PR 190: Setting up automated builds
• PR 188: Allow a fixed number of sync dirs instead of removing by date
• PR 191: Add code to support and test computed MSIDs
• PR 193: Add MSID title and unit y-label to plot
• PR 189: Make namespace package native
• PR 194: Better warnings
• PR 195: Fix problem with sync stats update for rarely sampled content
• PR 196: Allow model version in MUPS clean computed MSID and fix tests
• PR 197: Shiny tests
• PR 198: Allow multiple paths in ENG_ARCHIVE
• PR 199: Shiny workflow update
• PR 200: Shiny workflow update
• PR 203: Unified documentation style
• PR 202: Remove use of axes.axesPatch. This is a shiny change. Fixes Weekly release 2019.09.09 #201
• PR 204: Fix a problem with remote access on Windows in Py3.8
• PR 205: Shiny remote followup
• PR 206: Lazy-load inital content and remote access setup
• PR 208: Use get_xija_model_spec instead of GitHub for pftank2t model

ska.file: 3.4.3 -> 3.4.5 (3.4.3 -> 3.4.4 -> 3.4.5)

• PR 9: Setting up automated builds
• PR 8: Make namespace package native
• PR 10: Shiny workflow update
• PR 11: Shiny workflow update
• PR 13: Unified documentation style

ska.ftp: 3.5.2 -> 3.6.0 (3.5.2 -> 3.5.3 -> 3.6.0)

• PR 19: Setting up automated builds
• PR 20: Windows compatibility
• PR 18: Make namespace package native
• PR 21: Improve input validation, make tests more consistent
• PR 22: Version for shiny
• PR 23: Shiny workflow update
• PR 24: Shiny workflow update
• PR 26: Unified documentation style

ska.matplotlib: 3.11.3 -> 3.12.0 (3.11.3 -> 3.11.4 -> 3.12.0)

• PR 12: Setting up automated builds
• PR 11: Make namespace package native
• PR 9: Avoid top-level import of pyplot for benefit of upstream packages
• PR 13: Version for shiny
• PR 14: Accept any validate DateTime or CxoTime initializer
• PR 15: Shiny workflow update
• PR 16: Shiny workflow update
• PR 18: Unified documentation style

ska.numpy: 3.8.2 -> 3.9.0 (3.8.2 -> 3.8.3 -> 3.8.4 -> 3.9.0)

• PR 5: Setting up automated builds
• PR 4: Make namespace package native
• PR 6: Fix the location of the C extension
• PR 7: Allow setup.py --version to run without Cython, numpy
• PR 8: Version for shiny
• PR 9: Shiny tests
• PR 10: Shiny workflow update
• PR 11: Shiny workflow update
• PR 13: Unified documentation style

ska.parsecm: 3.3.3 -> 3.4.0 (3.3.3 -> 3.3.4 -> 3.4.0)

• PR 7: Setting up automated builds
• PR 6: Make namespace package native
• PR 8: Deprecate use of Ska.ParseCM
• PR 9: Shiny workflow update
• PR 10: Shiny workflow update
• PR 12: Unified documentation style

ska.quatutil: 3.3.2 -> 3.4.0 (3.3.2 -> 3.3.3 -> 3.4.0)

• PR 9: Setting up automated builds
• PR 8: Make namespace package native
• PR 10: Version for shiny
• PR 11: Shiny workflow update
• PR 12: Shiny workflow update
• PR 15: Unified documentation style

ska.shell: 3.4.0 -> 3.5.0 (3.4.0 -> 3.4.1 -> 3.5.0)

• PR 17: Setting up automated builds
• PR 18: Skip all tests on Windows
• PR 16: Make namespace package native
• PR 19: Use explicit package name in call to get_version
• PR 20: Shiny workflow update
• PR 21: Shiny workflow update
• PR 23: Unified documentation style

ska.sun: 3.5.2 -> 3.6.0 (3.5.2 -> 3.5.3 -> 3.6.0)

• PR 11: Setting up automated builds
• PR 10: Make namespace package native
• PR 12: Shiny workflow update
• PR 13: Shiny workflow update
• PR 15: Unified documentation style

ska.tdb: 3.5.2 -> 3.6.0 (3.5.2 -> 3.5.3 -> 3.6.0)

• PR 11: Setting up automated builds
• PR 10: Make namespace package native
• PR 12: Version for shiny
• PR 13: Shiny workflow update
• PR 14: Shiny workflow update
• PR 16: Unified documentation style

ska3-core: 2020.5 -> 2020.13rc11+shiny

ska_helpers: 0.1.0 -> 0.3.0 (0.1.0 -> 0.1.1 -> 0.1.2 -> 0.2.0 -> 0.3.0)

• PR 9: Setting up automated builds
• PR 10: when running testr, avoid emitting this warning
• PR 12: get version without importing
• PR 13: Ignore useless warning about Ska being already imported
• PR 14: Shiny workflow update
• PR 15: Shiny workflow update
• PR 16: Add ska_helpers.utils module with LazyDict

ska_path: 3.1.1 -> 3.1.2 (3.1.1 -> 3.1.2)

• PR 6: Setting up automated builds
• PR 7: Shiny workflow update
• PR 8: Shiny workflow update

ska_sync: 4.6.0 -> 4.7.0 (4.6.0 -> 4.7.0)

• PR 17: Setting up automated builds
• PR 19: Shiny workflow update
• PR 20: Shiny workflow update
• PR 16: Add old config as ska_sync/limited_config
• PR 22: Use getpass.getuser() instead of USER env var
• PR 21: Add chandra_models for sync

sparkles: 4.6.0 -> 4.7.0 (4.6.0 -> 4.7.0)

• PR 142: Fix date in test for Chandra.Time 4.0+
• PR 143: formatted callargs HTML id to be consistent between JavaScript and HTML
• PR 106: Improve roll options including uniform sampling of roll range
• PR 145: Shiny workflow update
• PR 146: Shiny workflow update

starcheck: 13.5.1 -> 13.7.1 (13.5.1 -> 13.6.0 -> 13.7.0 -> 13.7.1)

• PR 339: Setting up automated builds
• PR 342: Update ccd red/yellow limits for Apr2020 increase
• PR 343: Use chandra_aca's guide_count for the perigee bright star check
• PR 344: Use RLTT and schedule_stop in thermal calculation
• PR 347: Check for perl based on location of Ska Python
• PR 348: Trim Perl dependencies by moving more to Python
• PR 349: Update ACA model spec for shiny
• PR 350: Shiny workflow update
• PR 351: Shiny workflow update
• PR 355: Update ACA thermal model to summer 2020 recal
• PR 354: Handle lack of Notes on MON star in guide summary
• PR 356: Remove orphaned scripts / makefile
• PR 357: change yaml loading to avoid warning

testr: 4.3.1 -> 4.5.0 (4.3.1 -> 4.4.0 -> 4.5.0)

• PR 20: Setting up automated builds
• PR 22: Ignore certain warnings and supply pytest args as list not string
• PR 21: Skare3 ci
• PR 23: Disable caching of test results
• PR 24: Support running with no --test-spec
• PR 25: Ignore bleach warning
• PR 26: Shiny workflow update
• PR 27: Shiny workflow update
• PR 29: Unified documentation style
• PR 30: rename log files and use pathlib.Path
• PR 32: Support Windows for package testing

xija: 4.19.0 -> 4.21.1 (4.19.0 -> 4.20.0 -> 4.20.1 -> 4.21.0 -> 4.21.1)

• PR 91: Shiny
• PR 92: Shiny workflow update
• PR 93: Shiny workflow update
• PR 95: Unified documentation style
• PR 97: Migrate all doc strings to use numpydoc
• PR 99: Allow model_spec to be provided as Path
• PR 96: Add module to allow getting model spec files from Ska data
• PR 100: Add timeout error catch that occurs on linux
• PR 102: Fix get_model_spec to work on Windows
• PR 103: Add MSIDStatePower component
• PR 104: Use github's 'latest' release link for latest version

ska3-core

New Packages

astropy-sphinx-theme: 1.1

attrs: 19.3.0

autopep8: 1.5.3

backcall: 0.2.0

bcrypt: 3.1.7

blosc: 1.19.0

brotlipy: 0.7.0

bzip2: 1.0.8

ca-certificates: 2020.6.24

commonmark: 0.9.1

conda: 4.8.3

conda-build: 3.18.11

conda-package-handling: 1.6.1

dbus: 1.13.16

filelock: 3.0.12

flake8: 3.8.3

future: 0.18.2

gettext: 0.19.8.1

gitdb: 4.0.5

glib: 2.65.0

glob2: 0.7

importlib-metadata: 1.7.0

importlib_metadata: 1.7.0

intel-openmp: 2019.4

joblib: 0.16.0

jplephem: 2.14

json5: 0.9.5

jupyterlab: 2.1.5

jupyterlab_server: 1.2.0

kiwisolver: 1.2.0

lcms2: 2.11

libarchive: 3.4.2

libedit: 3.1.20191231

libffi: 3.3

libiconv: 1.16

liblief: 0.10.1

libllvm9: 9.0.1

libsodium: 1.0.18

libxml2: 2.9.10

llvm-openmp: 10.0.0

lz4-c: 1.9.2

lzo: 2.10

matplotlib-base: 3.2.2

mccabe: 0.6.1

mkl-service: 2.3.0

mkl_fft: 1.1.0

mkl_random: 1.1.1

mock: 4.0.2

more-itertools: 8.4.0

ncurses: 6.2

numpy-base: 1.18.5

pandoc: 2.10

parso: 0.7.0

pcre: 8.44

pkginfo: 1.5.0.1

pluggy: 0.13.1

prometheus_client: 0.8.0

prompt-toolkit: 3.0.5

py-lief: 0.10.1

pycosat: 0.6.3

pynacl: 1.4.0

pyopenssl: 19.1.0

pyrsistent: 0.16.0

pysocks: 1.7.1

python-libarchive-c: 2.9

ripgrep: 11.0.2

ruamel_yaml: 0.15.87

send2trash: 1.5.0

setuptools-scm: 4.1.2

smmap: 3.0.2

snappy: 1.1.8

soupsieve: 2.0.1

sphinx-argparse: 0.2.5

sphinxcontrib-applehelp: 1.0.2

sphinxcontrib-devhelp: 1.0.2

sphinxcontrib-htmlhelp: 1.0.3

sphinxcontrib-jsmath: 1.0.1

sphinxcontrib-qthelp: 1.0.3

sphinxcontrib-serializinghtml: 1.1.4

tbb: 2020.0

threadpoolctl: 2.1.0

toml: 0.10.1

tqdm: 4.47.0

typing_extensions: 3.7.4.2

urllib3: 1.25.9

webencodings: 0.5.1

zipp: 3.1.0

zstd: 1.4.5

Updated Packages

• alabaster: 0.7.10 -> 0.7.12
• asgiref: 3.2.3 -> 3.2.10
• astroid: 1.5.3 -> 2.4.2
• astropy: 3.0.3 -> 4.0.1.post1
• astropy-healpix: 0.4 -> 0.5
• babel: 2.5.0 -> 2.8.0
• beautifulsoup4: 4.6.0 -> 4.9.1
• bleach: 1.5.0 -> 3.1.5
• bokeh: 0.12.7 -> 2.1.1
• certifi: 2016.2.28 -> 2020.6.20
• cffi: 1.10.0 -> 1.14.0
• cryptography: 1.8.1 -> 2.9.2
• cython: 0.26 -> 0.29.21
• decorator: 4.1.2 -> 4.4.2
• django: 3.0.1 -> 3.0.3
• docutils: 0.14 -> 0.16
• docxtpl: 0.6.3 -> 0.10.0
• entrypoints: 0.2.3 -> 0.3
• expat: 2.1.0 -> 2.2.9
• freetype: 2.5.5 -> 2.10.2
• gitpython: 2.1.3 -> 3.1.3
• h5py: 2.7.0 -> 2.10.0
• hdf5: 1.8.17 -> 1.10.4
• icu: 54.1 -> 58.2
• idna: 2.6 -> 2.10
• imagesize: 0.7.1 -> 1.2.0
• ipykernel: 4.6.1 -> 5.3.3
• ipyparallel: 6.0.2 -> 6.3.0
• ipython: 6.1.0 -> 7.16.1
• ipywidgets: 7.3.0 -> 7.5.1
• isort: 4.2.15 -> 4.3.21
• jedi: 0.10.2 -> 0.17.1
• jinja2: 2.9.6 -> 2.11.2
• jsonschema: 2.6.0 -> 3.2.0
• jupyter_client: 5.1.0 -> 6.1.6
• jupyter_console: 5.2.0 -> 6.1.0
• jupyter_core: 4.3.0 -> 4.6.3
• lazy-object-proxy: 1.3.1 -> 1.4.3
• libcxx: 9.0.1 -> 10.0.0
• libgfortran: 3.0.0 -> 3.0.1
• libpng: 1.6.30 -> 1.6.37
• libtiff: 4.0.6 -> 4.1.0
• libxslt: 1.1.29 -> 1.1.34
• line_profiler: 2.0 -> 2.1.2
• llvmlite: 0.18.0 -> 0.33.0
• lxml: 3.8.0 -> 4.5.2
• markupsafe: 1.0 -> 1.1.1
• matplotlib: 2.0.2 -> 3.2.2
• mistune: 0.7.4 -> 0.8.4
• mkl: 2017.0.3 -> 2019.4
• nb_conda: 2.2.0 -> 2.2.1
• nb_conda_kernels: 2.1.0 -> 2.2.3
• nbconvert: 5.2.1 -> 5.6.1
• nbformat: 4.4.0 -> 5.0.7
• networkx: 1.11 -> 2.4
• notebook: 5.0.0 -> 6.0.3
• numba: 0.33.0 -> 0.50.1
• numexpr: 2.6.2 -> 2.7.1
• numpy: 1.12.1 -> 1.18.5
• numpydoc: 0.7.0 -> 1.1.0
• olefile: 0.44 -> 0.46
• openssl: 1.0.2l -> 1.1.1g
• packaging: 16.8 -> 20.4
• pandas: 0.20.3 -> 1.0.5
• paramiko: 2.1.2 -> 2.7.1
• pbr: 5.4.4 -> 5.4.5
• pexpect: 4.2.1 -> 4.8.0
• pickleshare: 0.7.4 -> 0.7.5
• pillow: 4.2.1 -> 7.2.0
• pip: 9.0.1 -> 20.1.1
• prompt_toolkit: 1.0.15 -> 3.0.5
• psutil: 5.2.2 -> 5.7.0
• ptyprocess: 0.5.2 -> 0.6.0
• py: 1.4.34 -> 1.9.0
• pycodestyle: 2.3.1 -> 2.6.0
• pycparser: 2.18 -> 2.20
• pyflakes: 1.6.0 -> 2.2.0
• pygments: 2.2.0 -> 2.6.1
• pylint: 1.7.2 -> 2.5.3
• pyparsing: 2.2.0 -> 2.4.7
• pyqt: 5.6.0 -> 5.9.2
• pytables: 3.4.2 -> 3.6.1
• pytest: 3.2.1 -> 5.4.3
• python: 3.6.2 -> 3.8.3
• python-dateutil: 2.6.1 -> 2.8.1
• python-docx: 0.8.7 -> 0.8.10
• pytz: 2017.2 -> 2020.1
• pyyaml: 3.12 -> 5.3.1
• pyzmq: 16.0.2 -> 19.0.1
• qt: 5.6.2 -> 5.9.7
• qtconsole: 4.3.1 -> 4.7.5
• qtpy: 1.3.1 -> 1.9.0
• readline: 6.2 -> 8.0
• requests: 2.14.2 -> 2.24.0
• rope: 0.9.4 -> 0.17.0
• scikit-learn: 0.19.0 -> 0.23.1
• scipy: 0.19.1 -> 1.5.0
• setuptools: 36.4.0 -> 49.2.0
• setuptools_scm: 3.3.3 -> 4.1.2
• sherpa: 4.11.1 -> 4.12.2
• sip: 4.18 -> 4.19.8
• six: 1.10.0 -> 1.15.0
• snowballstemmer: 1.2.1 -> 2.0.0
• sphinx: 1.6.3 -> 3.1.2
• sqlite: 3.13.0 -> 3.32.3
• sqlparse: 0.3.0 -> 0.3.1
• terminado: 0.6 -> 0.8.3
• testpath: 0.3.1 -> 0.4.4
• tk: 8.5.18 -> 8.6.10
• tornado: 4.5.2 -> 6.0.4
• traitlets: 4.3.2 -> 4.3.3
• wcwidth: 0.1.7 -> 0.2.5
• wheel: 0.29.0 -> 0.34.2
• widgetsnbextension: 3.3.0 -> 3.5.1
• wrapt: 1.10.11 -> 1.11.2
• xz: 5.2.3 -> 5.2.5
• yaml: 0.1.6 -> 0.2.5
• zeromq: 4.1.3 -> 4.3.2

Removed Packages

• _nb_ext_conf
• anaconda-client
• asn1crypto
• bkcharts
• clyent
• curl
• git
• gitdb2
• html5lib
• jbig
• krb5
• libgcc
• libssh2
• nb_anacondacloud
• nbpresent
• path.py
• pep8
• pyasn1
• pytest-arraydiff
• pytest-astropy
• pytest-doctestplus
• pytest-openfiles
• pytest-remotedata
• python.app
• qtawesome
• runipy
• simplegeneric
• singledispatch
• smmap2
• sphinxcontrib
• sphinxcontrib-websupport

Related Issues

Fixes #445
Fixes #446
Fixes #447
Fixes #448
Fixes #449
Fixes #450
Fixes #451
Fixes #452
Fixes #453
Fixes #454
Fixes #455
Fixes #456
Fixes #457
Fixes #458
Fixes #459
Fixes #460
Fixes #461
Fixes #462
Fixes #464
Fixes #465
Fixes #466
Fixes #467
Fixes #468
Fixes #469
Fixes #470
Fixes #471
Fixes #472
Fixes #473
Fixes #474
Fixes #475
Fixes #476
Fixes #477
Fixes #478
Fixes #479
Fixes #480
Fixes #481
Fixes #482
Fixes #483
Fixes #484
Fixes #485
Fixes #487
Fixes #489
Fixes #497
Fixes #498
Fixes #499
Fixes #500
Fixes #501
Fixes #503
Fixes #504
Fixes #506
Fixes #507
Fixes #510
Fixes #512
Fixes #515
Fixes #516
Fixes #518
Fixes #519
Fixes #520
Fixes #522
Fixes #523
Fixes #525
Fixes #526
Fixes #527
Fixes #528
Fixes #529
Fixes #532
Fixes #533
Fixes #534
Fixes #535
Fixes #536
Fixes #537
Fixes #538

[jeanconn]

Regarding combine_arch.py @javierggt do you have a separate build environment with skare3_tools installed or should we just add skare3_tools to ska3-flight-latest/ska3-flight at this point anyway?

[javierggt]

I normally install it separately. That is partly because I update it so much. I was thinking of adding skare3_tools to shiny.

[jeanconn]

Out of #508 we're left with some actions for combine arch

• probably cherry-pick 34bdad0 and 34cd77a to replace 115fd9b
• possibly remove the skare3_tools packages mechanism altogether, set it by option, or set it to work when subtract-env not supplied
• add an exception to the subtracting for ska3- packages... (so that ska3-core shows up as dependence of ska3-perl when using the subtract mechanism... though we don't want ska3-perl-latest as a dependence of ska3-perl... so this needs to know what metapackage you are trying to make).
• add some way to label the created metapackage
• maybe move this script out of ska3-core

[taldcroft]

👍 on moving the combine_arch script out of ska3-core.

[taldcroft]

Also add 34cd77a which I just noticed because the linter complained.

[jeanconn]

Or rebase this to just cut 115fd9b an then use your PR.

[javierggt]

Out of #508 we're left with some actions for combine arch

Just committed some changes corresponding to the items in @jeanconn's comment.

[jeanconn]

The workflow update on the wiki looks good to me! I think this maybe needs rebase, rerun of the workflow, and then a new RC to build the packages (like ska3-perl) for testing?