Release Release v2.9.0 · DARPA-ASKEM/terarium

What's Changed

[Task]: Ts/1024 calibrate tool read from mq by @Tom-Szendrey in #1758
feat: pyodide service support by @mwdchang in #1755
feat: plot input dataset values in calibrate chart by @Jami159 in #1751
feat: adding event sourcing for progress and intermediate results by @blanchco in #1683
chore: clean up pyodide usage and initialization by @mwdchang in #1782
refactor: tera-model rewrite - equations and observables by @shawnyama in #1761
chore: event source changes by @blanchco in #1783
feat: update code to plot input dataset for Julia calibrate by @Jami159 in #1781
fix: fix webworker build by @mwdchang in #1787
feat: rename dataset by @shawnyama in #1732
chore(deps): update jest monorepo by @renovate in #1789
fix(deps): update dependency @jupyterlab/ui-components to v3.6.5 by @renovate in #1790
fix(deps): update dependency @lumino/commands to v2.1.3 by @renovate in #1791
fix(deps): update dependency @lumino/coreutils to v2.1.2 by @renovate in #1792
fix: simplify matrix modal by @shawnyama in #1784
bug(hmi): Show/hide column in the dataset does not hide right column by @dvince2 in #1793
Task: This is no longer used anywhere by @Tom-Szendrey in #1802
chore: adding petrinet unit tests by @mwdchang in #1800
task: update env setting for knowledge-middleware by @YohannParis in #1804
task: renaming extraction-service to knowledge-middleware by @YohannParis in #1803
bug: add error handling for get all project by @YohannParis in #1809
chore: amr header fixes by @mwdchang in #1810
Eval transitions by @mj3cheun in #1805
feat: model enrichment by @shawnyama in #1794
task: data profiling by @YohannParis in #1811
Equations to model by @Jami159 in #1812
chore: fix code to model by @echl in #1808
Update nested graph by @mj3cheun in #1813
chore(deps): update actions/add-to-project digest to 4f0b69f by @renovate in #1814
fix(deps): update dependency feather-icons to v4.29.1 by @renovate in #1815
fix(deps): update dependency io.quarkus.platform:quarkus-bom to v2.16.10.final by @renovate in #1816
nit: fix docstring by @Jami159 in #1819
fix(deps): update dependency vue3-ace-editor to v2.2.3 by @renovate in #1817
feat: dataset operator node by @blanchco in #1799
chore(deps): update dependency @vitejs/plugin-vue to v4.3.4 by @renovate in #1818
fix: show names in model node dropdown by @shawnyama in #1820
fix: update timestamp util for calibrate input dataset by @Jami159 in #1788
fix(deps): update dependency @jupyterlab/services to v6.6.5 by @renovate in #1746
fix(deps): update dependency @jupyterlab/apputils to v3.6.5 by @renovate in #1506
fix: add input data line in calibrate workflow node chart by @Jami159 in #1823
Fix nested graph by @mj3cheun in #1824
chore: address code-to-model issues by @echl in #1825
increase size limit to allieviate search issues by @mwdchang in #1828
fix(deps): update dependency @jupyterlab/cells to v3.6.5 by @renovate in #1666
feat: add margin to petrinet nesting by @mj3cheun in #1827
feat: update code to plot input dataset for calibrate ensemble by @Jami159 in #1821
fix: incorrect transition matrix generation by @mwdchang in #1830
chore: remove deprecated fields by @mwdchang in #1832
refactor: merge model configs by @shawnyama in #1795
Fix: show rate expression instead of rate name by @blanchco in #1756
refactor: add llm component and destroy old tera-model by @shawnyama in #1839
task: adding ciemss name to ciemss mq related by @Tom-Szendrey in #1847
fix: modal overflow by @shawnyama in #1848
chore(deps): update dependency @types/lodash to v4.14.198 by @renovate in #1851
chore(deps): update dependency esbuild to v0.19.2 by @renovate in #1852
chore(deps): update dependency eslint to v8.49.0 by @renovate in #1853
chore(deps): update dependency eslint-config-prettier to v8.10.0 by @renovate in #1854
feat: floating windows example by @YohannParis in #1834
chore: reorganize workflow ops by @mwdchang in #1850
fix: missed file from workflow reorganization by @mwdchang in #1856
feat: update project card design by @shawnyama in #1857
fix: clear facet filters on resource type change by @blanchco in #1862
feat: fix parameters over time by @Tom-Szendrey in #1798
chore: cleanups by @mwdchang in #1858
Update to use renamed kernel name 'jupyterllm' -> 'beaker' by @mattprintz in #1864
fix: revert randomuuid change by @mwdchang in #1866
feat: sort project cards by @shawnyama in #1863
Consume intermediate julia calibrate results using rabbitmq by @Jami159 in #1861
Feat model transformer node by @blanchco in #1859
feat: tera-code polish by @echl in #1831
fix: explorer nav dropdown by @blanchco in #1872
chore(deps): update actions/add-to-project digest to d8e41a4 by @renovate in #1874
chore(deps): update dependency esbuild to v0.19.3 by @renovate in #1875
fix: linter by @blanchco in #1877
fix(deps): pin dependency uuid to 9.0.1 by @renovate in #1873
chore(deps): update jest monorepo by @renovate in #1876
chore: remove unneeded package-lock.json by @mwdchang in #1880
feat: project table view by @shawnyama in #1869
chore: refactor services/project call out of components using composables by @echl in #1785
feat: fullscreen modals by @blanchco in #1878
feat: card pagination by @shawnyama in #1882
Add dataset preview in the simulate output panel by @Jami159 in #1896
chore(deps): update gradle/wrapper-validation-action digest to 342dbeb by @renovate in #1903
chore(deps): update dependency @types/lodash to v4.14.199 by @renovate in #1904
fix(deps): update dependency io.quarkus.platform:quarkus-bom to v2.16.11.final by @renovate in #1905
chore: documentation for project composable by @echl in #1885
fix(deps): update dependency org.projectlombok:lombok to v1.18.30 by @renovate in #1906
feat: toaster on node failure by @Tom-Szendrey in #1909
fix: no longer remove state on error by @Tom-Szendrey in #1911
Group/Project permissions by @bigglesandginger in #1769
fix: sympy update function by @mwdchang in #1884
fix: equations to model by @YohannParis in #1902
fix: avoid passing empty project id to getAssets by @shawnyama in #1917
style: sidepanel footer css by @shawnyama in #1918
Spike/1797 task move hmi server to spring boot by @dgauldie in #1919
chore: enforce workflownode state by @mwdchang in #1920
chore(deps): update gradle/gradle-build-action digest to 62cce3c by @renovate in #1926
chore(deps): update dependency esbuild to v0.19.4 by @renovate in #1928
fix: minor fix by @Tom-Szendrey in #1931
Updating Resource to Controller per spring naming conventions by @dvince2 in #1930
temp fix: do with this as you will by @Tom-Szendrey in #1933
fixed broken use of crypto.randomUUID by @dgauldie in #1922
chore(deps): update gradle/wrapper-validation-action digest to 342dbeb by @renovate in #1927
1935 bug rebacservice is not working as expected by @dgauldie in #1936
remove useTransportSecurity call for spiceDB channel by @dgauldie in #1939
1940 feat create an update method for group and project permissions by @bigglesandginger in #1941
task: add better intellij support for local devlopment by @YohannParis in #1937
change from Master realm to Uncharted realm by @bigglesandginger in #1945
Finalize removal of quarkus server. by @dvince2 in #1944
Migrate event system to springboot by @dvince2 in #1942
chore(deps): update dependency gradle to v7.6.2 by @renovate in #1929
feat: parameter matrices by @mwdchang in #1881
get location and server from tds response by @bigglesandginger in #1950
[TASK]: Use local postgres database for local dev #1947 by @dvince2 in #1948
update Sort.by function inputs by @Jami159 in #1953
feat: add document asset by @blanchco in #1914
fix model_configurations post request param type by @Jami159 in #1956
feat: add regnet model definition by @mwdchang in #1946
fix: bug equations to amr by @YohannParis in #1962
feat: align model by @blanchco in #1916
fix: ensure we login after idle timeouts or on 401s by @chris-dickson in #1968
fix documents by @blanchco in #1969
chore(deps): update dependency gradle to v7.6.3 by @renovate in #1970
chore(deps): update eclipse-temurin docker tag by @renovate in #1971
chore(deps): update plugin org.graalvm.buildtools.native to v0.9.27 by @renovate in #1972
chore(deps): update plugin org.springframework.boot to v3.1.4 by @renovate in #1973
fix(deps): update dependency @jupyterlab/application to v3.6.6 by @renovate in #1974
add publicProject and userPermission to Project by @bigglesandginger in #1966
fix: call type for artifacts by @Tom-Szendrey in #1976
1949 task reimplement evaluationcontroller and simulationcontroller by @dvince2 in #1957
1963 feat add projects permission for the user and if public by @bigglesandginger in #1978
fix(hmi-server): Correct external publication endpoints #1980 by @dvince2 in #1982
fix: jsdelivr.url var read properly from app.props by @shawnyama in #1983
fix(hmi-server): Use correct gradle for startup script by @dvince2 in #1985
chore: move from artifacts -> documents where applicable by @Tom-Szendrey in #1986
fix: do not change route if name/path exists by @mwdchang in #1989
fix: display data card by @YohannParis in #1991
feat: upload resources modal by @echl in #1981
chore: project assets for text files are now documents (not artifacts) by @Tom-Szendrey in #1992
fix(hmi-server): Increase max upload size for files by @dvince2 in #1997
1993 feat limit xdd extraction previews for performance by @dvince2 in #1994
fix: fix upload resource modal merge by @echl in #1998
fix(hmi-server): Increase max upload size for files by @dvince2 in #1999
task: update to new version by @YohannParis in #2000
chore(deps): bump postcss from 8.4.30 to 8.4.31 by @dependabot in #1951
chore(deps): bump get-func-name from 2.0.0 to 2.0.2 by @dependabot in #1952
fix(hmi-server): use correct url by @dvince2 in #2003
style: simplify overview page - make banner fit in the actual header by @shawnyama in #2001
task: remove mit by @YohannParis in #2005
Disable multiple inputs into same simulate box by @Jami159 in #1913
feat: remove project page tabs by @shawnyama in #1988
fix: equation to model and default configurations by @blanchco in #2006
feat: share project by @echl in #1868
fix: petrinet render issues by @mwdchang in #2021
fix: fix llm notebook errors by @echl in #2025
tasK: update KnowledgeMiddlewareProxy to match new endpoints by @YohannParis in #2024
chore(deps): update gradle/gradle-build-action digest to 0bfe00a by @renovate in #2028
fix(deps): update dependency @jupyterlab/coreutils to v5.6.6 by @renovate in #2029
fix(deps): update dependency axios to v1.5.1 by @renovate in #2030
fix(deps): update dependency katex to v0.16.9 by @renovate in #2031
style: new button group style and leverage SelectButton component by @shawnyama in #2019
Fix: acc closed, diagram changed, acc opened, no change by @Tom-Szendrey in #2040
Update how datasets are updated by @Jami159 in #2041
task: display cosmos extractions from s3 instead of xdd by @YohannParis in #2042
feat: editable parameter matrices by @shawnyama in #1955
task: enrichment feedback by @blanchco in #2049
task: first pass at displaying equations by @YohannParis in #2045
checking file extensions. some file types not rec by @Tom-Szendrey in #2047
feat: crete doc using unpaywall by @blanchco in #2020
task: only run one publish workfkow at the time by @YohannParis in #2051
Revert "task: only run one publish workfkow at the time" by @YohannParis in #2052
Chore: adding some user communication by @Tom-Szendrey in #2050
Fix: fixing get. Safety check had its seatbelt wrong by @Tom-Szendrey in #2053
Thanks SHAWN! by @Tom-Szendrey in #2055
fix: fix refreshing to overview page by @echl in #2058
fix: extraction and other concepts by @blanchco in #2059
fix: project name nav by @blanchco in #2063
feat: transition matrices by @shawnyama in #1912
chore: remove green info messages by @blanchco in #2066
feat: provenance to model to doc by @blanchco in #1921
style: update modal designs and create secondary button rule by @shawnyama in #2067
Persist chart configs when switching between different runs by @Jami159 in #2065
Fix simulate output port label by @Jami159 in #2073
style: border adjust on project page by @shawnyama in #2076
clean: organize matrix config functions by @shawnyama in #2075
task: provenance type from publication to document by @blanchco in #2077
feat: update code-to-amr endpoint params by @shawnyama in #2078
Show input configs in simulate drilldown by @Jami159 in #2079
chore: house cleaning Oct 2023 by @mwdchang in #2080
Fix simulation drilldown scroll by @Jami159 in #2082
task: update MIRAProxy.java by @YohannParis in #2085
chore(deps): update dependency @types/jest to v29.5.6 by @renovate in #2086
chore(deps): update dependency @types/lodash to v4.14.200 by @renovate in #2087
chore(deps): update dependency esbuild to v0.19.5 by @renovate in #2088
chore(deps): update plugin org.graalvm.buildtools.native to v0.9.28 by @renovate in #2089
task: vue-router refresh issue by @YohannParis in #2083
fix: edit model configs by @blanchco in #2092
feat: impl tera-text-editor by @echl in #2072
feat: code to model works with dynamics by @shawnyama in #2084
Update application.properties by @YohannParis in #2093
1990 task working on decentralizing local development by @dgauldie in #2036
fix: catch general document error if there's an error processing equation images by @blanchco in #2097
fix: fix reset spelling by @shawnyama in #2098
fix: project rename by @shawnyama in #2099
Use actual simulation metadata instead of state metadata for drilldown by @Jami159 in #2100
Fix urls in data-service docker compose file by @mattprintz in #2103
task: spinner for documents by @blanchco in #2101
chore: remove related papers section on home page by @shawnyama in #2104
1960 bug new users are unable to see projects after they get set a user role by @bigglesandginger in #2018
fix: mira endpoints by @blanchco in #2106
fix: project loading navigation issues by @blanchco in #2108
task: display model parameters name by @YohannParis in #2110
fix for not being able to display equations by @dgauldie in #2112
Task: Adding FUNMAN basic APIs into hmiserver. by @Tom-Szendrey in #2107
feat: explorer topic selector by @blanchco in #2114
if a CSV row has null values, we set them as "" instead by @dgauldie in #2116
fix: shows if non unpaywall paper is not found by @shawnyama in #2121
task: separate enrichement alignement and extractions by @YohannParis in #2120
chore(deps): update eclipse-temurin docker tag by @renovate in #2123
chore(deps): update plugin org.springframework.boot to v3.1.5 by @renovate in #2124
fix(deps): update dependency keycloak-js to v22.0.5 by @renovate in #2125
fix(deps): update dependency org.keycloak:keycloak-admin-client to v20.0.5 by @renovate in #2126
feat: group/user admin fixes and polish by @echl in #2119
initial decapodes typing by @mwdchang in #2039
fix: ensure keycloak-js and vue-router do not interfere with eachother by @chris-dickson in #2122
feat: homepage redesign by @shawnyama in #2109
Ts/1871 task stratify a model workflow by @Tom-Szendrey in #2118
we now check to see if a resource is not a pdf. In that case, we need… by @dgauldie in #2133
fix: keycloack user config not being downloaded by @YohannParis in #2134
Task: Updating based off of siftech/funman by @Tom-Szendrey in #2141
Funman functions by @Jami159 in #2136
fix: broken style by @echl in #2142
fix: clear cookies before keycloak is initialized by @shawnyama in #2144
task: save assets from github url by @blanchco in #2131
increate model return limit by @mwdchang in #2146
fix: recognize page type when an asset is highlighted on the sidebar by @shawnyama in #2148
Task[hmi-server]: reimplement ssemq on hmi server by @dvince2 in #2150
chore: move app footer into its own component by @shawnyama in #2152
Build local docker-compose.yml file based on full config by @mattprintz in #2149
Only display errors from inside of the amqp framework by @dvince2 in #2154
feat: maintain open closed resource tabs using localstorage by @shawnyama in #2155
350 save xdd extractions when importing publications as documents by @dvince2 in #2153
Recursion issue on startup of SSE subsystem by @dvince2 in #2164
Code to model op by @mwdchang in #2129
chore(deps): update actions/add-to-project digest to 0be3b65 by @renovate in #2170
chore(deps): update dependency @types/jest to v29.5.7 by @renovate in #2171
chore(deps): update eclipse-temurin docker tag to v17.0.9_9-jdk-focal by @renovate in #2172
Provisional regnet stockflow support by @mwdchang in #2167
2165 finishing sse feedback by @dvince2 in #2173
fix(deps): pin dependency @microsoft/fetch-event-source to 2.0.1 by @renovate in #2169
Directory Structure in Code Asset by @blanchco in #2147
fix: sse reconnecting too often by @YohannParis in #2166
2127 bug missing role checking for api calls by @bigglesandginger in #2130
SSE and mq improvements by @dvince2 in #2178
Add proper env variables for rabbitmq/sse communication by @mattprintz in #2179
task: update variables extractions by @YohannParis in #2139
sever connection between mq and hmi, and sse between server and clien… by @dvince2 in #2181
Remove PII from log by @bigglesandginger in #2184
feat: edit/create project modal by @shawnyama in #2174
chore: factor out event-emitter, add unit tests by @mwdchang in #2189
first pass at a migration script for TDS by @dgauldie in #2187
/external/publications is potentially not a valid endpoint anymore, s… by @bigglesandginger in #2203
change when/how the projects a user can see are collected. by @bigglesandginger in #2199
fix: null image extractions by @blanchco in #2204
Stratification workflow 2 by @mwdchang in #2177
fix: xdd extractions not displaying by @blanchco in #2206
fix(deps): update dependency axios to v1.6.0 [security] by @renovate in #2208
Ts/1925 funman workflow by @Tom-Szendrey in #2143
feat: init building blocks for code blocks by @blanchco in #2176
fix build issue by @dgauldie in #2213
remove secured from api call by @bigglesandginger in #2215
chore: remove viridis by @shawnyama in #2217
[fix: hmi-server] Use askem_object_limit instead of entity_limit with xdd by @dvince2 in #2220
feat: edit code blocks by @blanchco in #2219
chore: move workflow drilldown from project to workflow page by @mwdchang in #2209
chore(deps): update gradle/gradle-build-action digest to 9bca466 by @renovate in #2227
chore(deps): update dependency @types/jest to v29.5.8 by @renovate in #2228
chore(deps): update dependency @types/lodash to v4.14.201 by @renovate in #2230
chore(deps): update plugin io.spring.dependency-management to v1.1.4 by @renovate in #2231
2183 working on ampq to handle multiple hmi server instance by @dvince2 in #2216
refactor: delete tera-project-page and move asset components to tera-project by @shawnyama in #2221
chore: small workflow related cleanups by @mwdchang in #2223
Task: 2232 funman UI by @Tom-Szendrey in #2235
treat keycloak as canonical source by @bigglesandginger in #2226
Plot intermediate loss, states, params by @Jami159 in #2229
feat: Kernel message dispatcher by @mwdchang in #2234
feat: operator node header by @shawnyama in #2211
[fix: hmi-server] Add safety code to sciml message reading by @dvince2 in #2240
chore: code asset styling tweaks by @blanchco in #2252
Jamie less padding within datatable by @YohannParis in #2259
fix: redirect to overview page if you removed an asset that's currently opened by @shawnyama in #2254
Kernel dispatch mira stratify by @Jami159 in #2255
bug: loader issues by @blanchco in #2263
2243 feat generate initial permissions by @bigglesandginger in #2244
feat: operator inputs by @shawnyama in #2256
Adding debug log by @dvince2 in #2268
task: code asset workflow node by @blanchco in #2236
Kernel dispatch model from code by @Jami159 in #2257
style: 1rem = 16px by @shawnyama in #2269
[fix: hmi-server] Update how hmi-server interacts with sciml kickoff … by @dvince2 in #2241
fix: get default port label by port type by @shawnyama in #2270
feat (hmi): Add Model/Controller/Proxy for Equations in HMI-Server by @dvince2 in #2275
fix(deps): update dependency @hsorby/vue3-katex to v0.6.0-rc.7 by @renovate in #2281
fix(deps): update dependency axios to v1.6.2 by @renovate in #2282
fix(deps): update dependency org.springframework.cloud:spring-cloud-dependencies to v2022.0.4 by @renovate in #2283
fix(deps): update dependency vue3-ace-editor to v2.2.4 by @renovate in #2284
style: scope some components by @shawnyama in #2288
Julia Calibrate get final params from run results by @Jami159 in #2280
use image from ghcr by @bigglesandginger in #2290
feat: operation outputs by @shawnyama in #2276
feat: operator title by @shawnyama in #2294
refactor: tweaks to operator outputs by @shawnyama in #2296
fix: open drilldown by @blanchco in #2298
start consolidating events by @mwdchang in #2292
fix: isOptional prop for WorkflowPort is not optional by @shawnyama in #2302
feat: dynamic component routing for operation drilldown by @mwdchang in #2300
task: tera drilldown header by @blanchco in #2291
chore: workflow project resource cleanup by @mwdchang in #2304
style: dataset node design update by @shawnyama in #2307
Add notebook functionality to Mira Stratify by @Jami159 in #2299
feat: bitmasking first pass by @shawnyama in #2301
feat: workflow operation registry by @mwdchang in #2310
Drilldown layout, behaviour, and preview by @blanchco in #2303
chore(deps): update gradle/gradle-build-action digest to 87a9a15 by @renovate in #2320
chore(deps): update gradle/gradle-build-action digest to 0280eb7 by @renovate in #2322
chore(deps): update dependency @types/jest to v29.5.10 by @renovate in #2321
chore(deps): update dependency @types/lodash to v4.14.202 by @renovate in #2323
[TASK] workflow update to handle multiple runs by @YohannParis in #2309
Task: funman output should be slightly more inline with designs by @Tom-Szendrey in #2316
fix: funman layout by @blanchco in #2327
task: update drilldown nodes by @blanchco in #2318
docs: update and cleanup the readme. by @kbirk in #2325
chore: cleanup drag in tera-operator by @mwdchang in #2330
feat: model config operator by @mwdchang in #2317
feat: operator image carousel by @shawnyama in #2319
feat: placeholder graphic for operators by @shawnyama in #2333
task: update funman drilldown by @blanchco in #2334
refactor: prettier imports and addressing fixmes by @mwdchang in #2335
docs: update debugging instructions in README.md by @kbirk in #2337
style: use native css nesting for easier operator input/output style management by @shawnyama in #2339
update: stratify mira drilldown by @blanchco in #2338
enhancement: drilldown section by @blanchco in #2341
feat: facet preview by @shawnyama in #2342
feat: operator status preview by @shawnyama in #2347
fix: stop the warning message spam coming from model from code node by @shawnyama in #2352
Task: funman - 4 by @Tom-Szendrey in #2340
Optimize operator UI by @Jami159 in #2336
Optimize operator UI code cleanup by @Jami159 in #2355
Fix drilldown header height by @blanchco in #2360
Rename beaker kernel to match upstream changes by @mattprintz in #2362
fix: rewire operations to use modelId instead of modelConfigurationId by @mwdchang in #2361
chore(deps): update dependency @vue/eslint-config-airbnb-with-typescript to v7.0.1 by @renovate in #2366
chore(deps): update dependency esbuild to v0.19.8 by @renovate in #2367
fix(deps): update vue monorepo to v3.3.9 by @renovate in #2368
Fix: stopping console errors by @Tom-Szendrey in #2369
feat: tera-carousel by @shawnyama in #2353
task: project loading state by @blanchco in #2278
feat: code to model accepts code id by @shawnyama in #2373
update: model from code drilldown by @blanchco in #2372
docs: update readme, add vscode project files. by @kbirk in #2376
fix: fix code asset call in code node and globalize small dropdown rule by @shawnyama in #2379
feat: output port for mira-stratify by @mwdchang in #2377
refactor: generate context menu from specification by @mwdchang in #2380
task: generate model from code asset by @blanchco in #2382
feat: workflow tiered menu by @shawnyama in #2384
Julia calibrate initial UI refactor by @Jami159 in #2364
Ciemss calibrate initial UI refactor by @Jami159 in #2386
Handle poller stop for Calibrate by @Jami159 in #2392
task: semantic table component by @blanchco in #2388
Small big fixes by @YohannParis in #2396
chore(deps): bump @babel/traverse from 7.22.20 to 7.23.2 by @dependabot in #2023
feat: update node buttons and placeholders by @shawnyama in #2389
chore(deps): update dependency @types/jest to v29.5.11 by @renovate in #2401
fix(deps): update vue monorepo to v3.3.11 by @renovate in #2402
task: fix funman traj manip by @Tom-Szendrey in #2394
Upgrading tooling by @YohannParis in #2399
feat: add asset from new popup menu by @shawnyama in #2405
fix: beaker-kernel changes by @mwdchang in #2408
feat: handle multiple outputs in drilldown by @blanchco in #2397
Fix stratify mira reset by @Jami159 in #2411
Move the operator component under the components folder. by @YohannParis in #2415
feat: coupling models by @mwdchang in #2378
Refactor calibrate Julia run selection by @Jami159 in #2398
feat: prepare model-template canvas, sidebar and cards by @shawnyama in #2413
task visualize code blocks by @blanchco in #2422
Feat: edit model v0 by @Tom-Szendrey in #2407
Design paper-cuts by @YohannParis in #2432
fix: fluent interface kernel session by @mwdchang in #2437
chore(deps): update gradle/gradle-build-action digest to f95e9c7 by @renovate in #2444
chore(deps): update dependency eslint-plugin-import to v2.29.1 by @renovate in #2445
chore(deps): update dependency vite to v5.0.10 by @renovate in #2447
fix(deps): update dependency ace-builds to v1.32.2 by @renovate in #2448
New header menu by @YohannParis in #2440
Feat: Auto mapping for calibration V0 by @Tom-Szendrey in #2426
code asset count code blocks & final-ish design of model from code by @blanchco in #2436
Update simulation operators by @Jami159 in #2424
fix: relinking edges by @mwdchang in #2443
task: document operator by @blanchco in #2452
Mira stratify drilldown update by @Jami159 in #2453
chore(deps): update gradle/gradle-build-action digest to 5d2dd0d by @renovate in #2456
chore(deps): update dependency esbuild to v0.19.10 by @renovate in #2457
chore(deps): update dependency vue-tsc to v1.8.26 by @renovate in #2458
fix(deps): update vue monorepo to v3.3.13 by @renovate in #2459
chore(deps): update dependency esbuild to v0.19.11 by @renovate in #2461
chore(deps): update gradle/gradle-build-action digest to 90bcad5 by @renovate in #2460
chore(deps): update dependency vue-tsc to v1.8.27 by @renovate in #2462
fix(deps): update dependency ace-builds to v1.32.3 by @renovate in #2463
chore: general clean up, show available names in comments by @mwdchang in #2464
feat: draggable template card by @shawnyama in #2429
fix: node stretch on negative x-axis by @shawnyama in #2471
fix: edge relink skipping candidate edges by @mwdchang in #2472
chore(deps): pin node.js by @renovate in #2365
chore: funman cleanup by @mwdchang in #2477
Random Paper cuts by @YohannParis in #2475
Feat: Auto Map V1 by @Tom-Szendrey in #2430
chore: funman hardening part 2 by @mwdchang in #2480
feat: first pass of new tera-model layout by @shawnyama in #2478
Model config operator drilldown - first pass by @Jami159 in #2455
chore(deps): update gradle/gradle-build-action digest to 7af8983 by @renovate in #2488
chore(deps): update dependency vite to v5.0.11 by @renovate in #2489
fix(deps): update dependency axios to v1.6.5 by @renovate in #2490
chore(deps): update authzed/spicedb docker tag to v1.28.0 by @renovate in #2491
Fix decimal input not working for model config drilldown by @Jami159 in #2494
task: model from document operator by @blanchco in #2454
Model config drilldown minor cleanup by @Jami159 in #2502
rewrite document asset by @blanchco in #2484
feat: model template edges and template name edit by @shawnyama in #2496
fix: funman trajectory and constraint group reactivity bugs by @mwdchang in #2505
rewrite dataset by @blanchco in #2497
Jamie january style tweaks by @jamiewaese-uncharted in #2487
chore: remove unused files by @mwdchang in #2510
fix: reroute funman-url to match orchestration by @mwdchang in #2516
feat: add real template blocks by @shawnyama in #2508
fix: sidepanel scroll persists by @blanchco in #2529
rewrite code asset with asset blocks by @blanchco in #2527
chore(deps): update gradle/gradle-build-action digest to 5516b39 by @renovate in #2531
chore(deps): update debian docker tag to v12.4 by @renovate in #2532
chore(deps): update dependency @rushstack/eslint-patch to v1.6.1 by @renovate in #2533
chore(deps): update dependency @vitejs/plugin-vue to v4.6.2 by @renovate in #2534
[TASK] Add type to import Types by @YohannParis in #2537
rm model from code button by @blanchco in #2540
Model config matrices functional implementation by @Jami159 in #2515
feat: funman refinements by @mwdchang in #2520
Fixed the project switcher dropdown menu width issue when project names are short by @jamiewaese-uncharted in #2541
Jamie: improved About modal on home screen by @jamiewaese-uncharted in #2549
chore(deps): update dependency vite to v5.0.12 [security] by @renovate in #2558
Funman drilldown boundary chart by @mwdchang in #2548
feat: template cards connect through junctions by @shawnyama in #2542
chore(deps): update gradle/gradle-build-action digest to 42452da by @renovate in #2567
fix(deps): update dependency @jupyterlab/application to v3.6.7 by @renovate in #2568
Jamie: tweak design of sticky header on model page by @jamiewaese-uncharted in #2563
fix(deps): update dependency @jupyterlab/cells to v3.6.7 by @renovate in #2571
Funman ui and ux tweaks by @mwdchang in #2569
redesign model config drilldown by @blanchco in #2556
[Task] add event for guided tour by @YohannParis in #2583
Changed operator name labels to sentence case with verbs first by @jamiewaese-uncharted in #2584
feat: staleness check and duplicate branch by @mwdchang in #2562
time-varying params by @blanchco in #2585
feat: provisionally working branch duplication interaction by @mwdchang in #2588
fix: remove selected resources footer by @shawnyama in #2589
[TASK] data service migration script into hmi server by @YohannParis in #2519
fix(hmi-client): Incorrect port for yarn local by @dvince2 in #2595
[BUG] Update package.json by @YohannParis in #2596
feat: move model editing procedures into its own service by @shawnyama in #2577
fix(hmi-server): Fixing datetime format for Simulation by @dvince2 in #2597
codeblocks to amr by @blanchco in #2593
Task: Add key to beaker docker + point to local by @Tom-Szendrey in #2606
2602 add common parent for terarium assets by @dvince2 in #2603
chore(deps): update gradle/gradle-build-action digest to d4bd442 by @renovate in #2609
chore(deps): update gradle/wrapper-validation-action digest to 1ff5a18 by @renovate in #2610
chore(deps): update dependency esbuild to v0.19.12 by @renovate in #2611
fix(hmi-server): Revert simulationResult to list of strings by @dvince2 in #2617
fix double simulations get doubly created by @mwdchang in #2620
fix(hmi-server): Local sim urls by @dvince2 in #2621
2544 - Async taskrunner with GoLLM model_card implementation by @kbirk in #2607
updating beaker env var names by @Tom-Szendrey in #2623
Fix image and types by @kbirk in #2626
2544 - Fix bake by @kbirk in #2628
2544 - Makefile it up by @kbirk in #2630
profile model when creating a model from code by @blanchco in #2618
2544 - Change the card field to the metadata. by @kbirk in #2631
fix: ensure generated type linting occurs on server changes by @chris-dickson in #2629
Fix incorrect paths in makefile by @kbirk in #2633
Fix: Data-transform-node by @Tom-Szendrey in #2634
feat: projects can be made public by @shawnyama in #2604
Task: Model Edit/Notebook LLM by @Tom-Szendrey in #2614
2622 task fix local development setup by @dgauldie in #2642
fix(hmi-server): sciml service fixes by @dvince2 in #2646
add model card to document to model by @blanchco in #2636
fix: update code owners by @chris-dickson in #2647
feat: call amr to template and add flat view by @shawnyama in #2639
fix: better default camera positioning by @mwdchang in #2654
chore: decapodes data structures by @mwdchang in #2653
Read faster from pipes. Add some checks in gollm controller. by @kbirk in #2656
added getter and setter methods by @dgauldie in #2658
Update pyciemss calibrate by @mwdchang in #2650
chore(deps): update actions/add-to-project digest to 0008229 by @renovate in #2660
chore(deps): update gradle/gradle-build-action digest to 0706ab3 by @renovate in #2661
chore(deps): update gradle/wrapper-validation-action digest to 83cf5fd by @renovate in #2663
chore(deps): update dependency @types/jest to v29.5.12 by @renovate in #2664
Fix: minor fix to model edit dropdown by @Tom-Szendrey in #2665
2667 bug unable to update document asset if the id is not in the payload by @dgauldie in #2668
2640 - Add esingest package with base covid opensource dataset ingest by @kbirk in #2655
feat(hmi-server): download code by @dvince2 in #2672
add file ext by @blanchco in #2674
Small fixes. Add cache bust to puill latest GoLLM in taskrunner build by @kbirk in #2670
Fix mq complexeties by @dvince2 in #2669
update openapi configuration by @dgauldie in #2681
docs: updated readme by @jryu01 in #2682
ciemss simulate using inferred_parameters by @mwdchang in #2659
2680 bug hmi server swagger is not working on staging by @dgauldie in #2683
2599 task add an istemporary flag to all assets by @dvince2 in #2678
Replaced empty state and loading svgs with Lottie file animations by @jamiewaese-uncharted in #2684
feat: reflect model template actions in mira by @shawnyama in #2652
chore: house cleaning feb 2024 by @mwdchang in #2689
gollm integration by @blanchco in #2662
Add model documents to search by @kbirk in #2675
Search by asset type endpoint by @kbirk in #2691
adding dropdown, adding status for kernel manager by @Tom-Szendrey in #2696
model card on document upload by @blanchco in #2693
2695 update ES index mappings by @dgauldie in #2700
chore(deps): update gradle/wrapper-validation-action digest to 63d15e7 by @renovate in #2703
chore(deps): update dependency gradle to v7.6.4 by @renovate in #2704
chore(deps): update ghcr.io/unchartedsoftware/keycloak docker tag to v22.0.4.0 by @renovate in #2705
fix(deps): update dependency ace-builds to v1.32.6 by @renovate in #2706
fixed issue with nested models the support additional properties fail… by @dgauldie in #2710
Jamie february papercuts 1 by @jamiewaese-uncharted in #2709
feat: model edit polish by @shawnyama in #2694
chore: bump julia to 1.10 by @mwdchang in #2720
Have searchable assets write to existing indices by @kbirk in #2707
Ciemss ensemble simulate by @mwdchang in #2701
update sciml-service and beaker by @dgauldie in #2719
2699 integrate climate data within hmi server by @bigglesandginger in #2702
chore(deps): replace dependency npm-run-all with npm-run-all2 5.0.0 by @renovate in #2608
model-dataset-enhancement by @blanchco in #2713
Jamie february papercuts 3 extra bits and pieces by @jamiewaese-uncharted in #2725
Small fixes by @YohannParis in #2721
fix: ensure workflow save on unload by @mwdchang in #2724
Small fixes by @YohannParis in #2726
Revert "Small fixes" by @YohannParis in #2729
feat: timeout connection attempts by @mwdchang in #2734
Jamie fixed the resizing modal when you drag & drop during the upload process by @jamiewaese-uncharted in #2737
Jamie adjust workflow link end size by @jamiewaese-uncharted in #2739
2698 new resources upload by @jryu01 in #2732
Fixed modal width and spacing by @jryu01 in #2746
concept search dataset by @blanchco in #2747
feat: add template to flat view by @shawnyama in #2717
Jamie february papercuts 2 the workflow edition by @jamiewaese-uncharted in #2714
operator active output behaviour by @mwdchang in #2736
chore(deps): update actions/add-to-project digest to 0609a27 by @renovate in #2751
chore(deps): update gradle/gradle-build-action digest to 585b565 by @renovate in #2752
fix initials/parameters display due to incorrect stratification usage by @mwdchang in #2754
Climate document ingest by @kbirk in #2745
Improving Toast, add success and do not hide errors by @YohannParis in #2759
search for assets use isPublic only by @bigglesandginger in #2740
Jamie edit model style updates by @jamiewaese-uncharted in #2749
Update search by asset type response to include id. by @kbirk in #2763
stratify refinement by @mwdchang in #2750
Jamie standardize all the node operator button labels by @jamiewaese-uncharted in #2768
Display all assets in the ressources panel by @YohannParis in #2769
fix: model-config ES errors by @mwdchang in #2762
funman changes by @mwdchang in #2755
Ts/2500 implement notebook beaker integrate within model config by @Tom-Szendrey in #2758
chore(deps): update dependency npm-run-all2 to v5.0.2 by @renovate in #2756
fix(deps): update dependency axios to v1.6.7 by @renovate in #2757
fix running local sciml by @mwdchang in #2766
Clearer stratify by @mwdchang in #2767
following model-edit styling by @Tom-Szendrey in #2770
Switch to POST for search-by-asset-type by @kbirk in #2773
feat: search by asset by @shawnyama in #2765
fix: ensemble ciemss by @mwdchang in #2775
Updates, fixes, and comments by @kbirk in #2777
Fix: Inputs can be optional by @Tom-Szendrey in #2779
add optimize simulation type by @dgauldie in #2782
Allow the use of the ARM image for beaker locally by @YohannParis in #2780
Beaker correction by @Tom-Szendrey in #2786
Configure Model Updates by @blanchco in #2722
fix sciml calibrate setup by @mwdchang in #2783
Ts/2509 task update entity similarity api by @Tom-Szendrey in #2791
Jamie improve the evaluation scenario modals by @jamiewaese-uncharted in #2731
Tweak to allow loading simulation results into the dataset beaker context by @mattprintz in #2771
remove extractions by @blanchco in #2792
feat: update search for document assets by @shawnyama in #2772
fix: natural conversion template by @shawnyama in #2795
cleanup preview and selection by @mwdchang in #2796
mira parameter stratify by @mwdchang in #2797
Ts/2790 mapping 1 to 1 by @Tom-Szendrey in #2799
minor update by @Tom-Szendrey in #2809
Add id to models, fix fileNames casing by @kbirk in #2808
mira model template preview for regnet/stockflow framework types by @mwdchang in #2802
fix(deps): update dependency org.elasticsearch.client:elasticsearch-rest-high-level-client to v7.17.18 by @renovate in #2825
fix(deps): update dependency org.springframework.cloud:spring-cloud-dependencies to v2022.0.5 by @renovate in #2826
chore(deps): update authzed/spicedb docker tag to v1.29.1 by @renovate in #2827
fix[hmi-server]: duplicate assets can be added to a project by @dvince2 in #2816
Jamie papercuts pg 16 pascales notes share project modal by @jamiewaese-uncharted in #2814
Jamie model card small formatting tweaks by @jamiewaese-uncharted in #2818
Jamie edit model remove resizable model container from preview window by @jamiewaese-uncharted in #2819
Jamie center empty state image in validate model configuration drilldown output by @jamiewaese-uncharted in #2820
Jamie fix the oversized legend in the model diagram by @jamiewaese-uncharted in #2821
increase limit to 1GB (and increase client timeout on upload to 1 hour) by @bigglesandginger in #2831
Fix model from equations by @blanchco in #2811
Jamie improve the evaluation scenario modals by @jamiewaese-uncharted in #2822
Jamie adjust workflow link end size by @jamiewaese-uncharted in #2823
Jamie remove visibility toggle from config table by @jamiewaese-uncharted in #2824
Jamie papercuts pascales notes pg 18 remove space from equations by @jamiewaese-uncharted in #2817
Update General Access when changed by @bigglesandginger in #2832
linter fix by @blanchco in #2836
fix: model-edit operator save/restore state by @mwdchang in #2829
regenet semantic tables by @blanchco in #2833
chore(deps): update debian docker tag to v12.5 by @renovate in #2828
Update ProjectAsset when updating Asset name by @YohannParis in #2728
feat: model comparison operator first pass by @shawnyama in #2806
fix[hmi-server]: incorrect parsing of some xdd documents by @dvince2 in #2841
Update tera-asset.vue by @jamiewaese-uncharted in #2839
Display model diagram/equations on node by @YohannParis in #2793
Revert "Update ProjectAsset when updating Asset name" by @YohannParis in #2846
Model conversion (MDL to Stockflow) by @kbirk in #2837
Show regnet and stockflow model diagrams EVERYWHERE by @blanchco in #2842
Jamie fix resource panel accordion counts when section is empty by @jamiewaese-uncharted in #2844
fix: xdd doc viewer by @shawnyama in #2843
fix issue with equations to model operator by @YohannParis in #2849
fix[hmi-server]: incorrect parsing of some pdf urls by @dvince2 in #2851
Fix and test other conversion tasks by @kbirk in #2853
Update local km to use live services by @YohannParis in #2830
Sim previews by @mwdchang in #2838
Jamie move suggested config section above context, add counts to accordions, don't show empty tables by @jamiewaese-uncharted in #2857
Exclude embeddings and text body from search-by-asset-type. Add term … by @kbirk in #2856
Fix equations to model operator and edit config by @YohannParis in #2859
Config from dataset by @kbirk in #2860
model config regnet tables by @blanchco in #2858
add asset to other projects by @blanchco in #2848
changed size of run button in the notebook by @jamiewaese-uncharted in #2866
Jamie fix compare models column widths by @jamiewaese-uncharted in #2869
Jamie configure model matrix fixes by @jamiewaese-uncharted in #2865
Model card from document by @YohannParis in #2867
Add way to propagate task response handler errors to users. Fix scaling issue for response handlers. by @kbirk in #2863
fix[hmi-server]: Dataset extract columns, doing it on GET if not present by @dvince2 in #2862
update heuristic to distinguish regular and stratified petrinets by @mwdchang in #2873
Compare Models by @bigglesandginger in #2874
fix: consistent name so xdd results appear by @shawnyama in #2877
feat: funman hackathon update by @mwdchang in #2872
feat: hookup beaker to model comparison by @shawnyama in #2864
fix: stratified matrix expressions by @shawnyama in #2881
Ace editor issues by @YohannParis in #2876
Jamie fix dataset add concepts bug by @dgauldie in #2883
Jamie redoing stratfify operator design tweaks by @jamiewaese-uncharted in #2875
Fix task response handler lookup by @kbirk in #2887
regnet stratify by @mwdchang in #2878
Typo, exclude the embeddings, not embeggings by @kbirk in #2890
We flew too close to the sun by @kbirk in #2894
Update font sizes and styles in petrinet-renderer and nested-petrinet… by @jamiewaese-uncharted in #2886
Prettier search bar on Explorer page by @jamiewaese-uncharted in #2896
Update text position in PetrinetRenderer by @jamiewaese-uncharted in #2897
Change how we ask for enrichment by @YohannParis in #2880
Model card by @YohannParis in #2895
Jamie adjust styling of extractions in documents by @jamiewaese-uncharted in #2892
KnowledgeController added the equation-to-amr and equation-to-latex skema endpoints by @kbirk in #2888
default show dataset and columns in transform by @blanchco in #2909
Optimize operator by @Tom-Szendrey in #2882
Fix Model card issues by @YohannParis in #2911
Jamie fix explorer input box so the height grows as expected when a long prompt linewraps by @jamiewaese-uncharted in #2908
Minor update to Dataset Concept Column UI by @jamiewaese-uncharted in #2910
refactor: model templating variable names by @shawnyama in #2900
ta3 model to equation plumbing by @mwdchang in #2901
chore(deps): update authzed/spicedb docker tag to v1.29.2 by @renovate in #2913
fix(deps): update dependency ace-builds to v1.32.7 by @renovate in #2914
fix(deps): update dependency chart.js to v4.4.2 by @renovate in #2916
chore(deps): update dependency @rushstack/eslint-patch to v1.7.2 by @renovate in #2917
remove model-service by @mwdchang in #2915
Jamie fix model edit canvas so items dont go outside canvas by @jamiewaese-uncharted in #2871
matrix easter egg by @jamiewaese-uncharted in #2902
2898 contributors and authors not showing on project cards by @bigglesandginger in #2899
client-event log spamming by @bigglesandginger in #2794
configure model from dataset by @blanchco in #2891
darker text for the toast messages == easier to read by @jamiewaese-uncharted in #2930
fix issue with concepts not showing up properly by @dgauldie in #2927
Jamie pdf viewer in document page improvements by @jamiewaese-uncharted in #2931
Configure model from dataset by @blanchco in #2929
Task caching and fixes by @kbirk in #2928
Fix: Save dataset from simulation by @Tom-Szendrey in #2934
reorg sciml simulate by @mwdchang in #2932
Feat: Optimize minor cleanups and corrections by @Tom-Szendrey in #2937
2889 task vensim support by @dgauldie in #2893
feat: update input ports on different output selection by @shawnyama in #2918
2778 logging and timing of terarium activities by @dvince2 in #2936
minor fix to sim -> dataset functionality by @Tom-Szendrey in #2945
Added box around suggested configurations section in tera-model-confi… by @jamiewaese-uncharted in #2941
Reorg sciml calibrate by @mwdchang in #2942
Fix: save from dataset can handle undefined by @Tom-Szendrey in #2951
Fix the mira convert and create model by @kbirk in #2948
gollm fixes and improvements by @blanchco in #2946
clone dataset-transform session on branching action by @mwdchang in #2953
2947 feat improve error logging from the back end to the client by @dvince2 in #2955
update all 30s timeouts to 1 hour by @bigglesandginger in #2957
feat: node/drilldown annotations by @shawnyama in #2952
2870 task link gollm compare models to component by @dgauldie in #2879
reorg ciemss simulate by @mwdchang in #2950
Change upload timeout on client nginx by @bigglesandginger in #2959
strip metadata before sending to gollm by @blanchco in #2958
Change upload timeout by @bigglesandginger in #2961
Styled dataset stats column with a boxplot for numbers and a list for categoricals by @jamiewaese-uncharted in #2949
fixed broken concepts for datasets and models by @dgauldie in #2964
Put the toast in the center and wider by @YohannParis in #2967
Bump ip from 2.0.0 to 2.0.1 by @dependabot in #2761
chore: remove unused code from renderer by @mwdchang in #2973
Update equations to model front end by @YohannParis in #2971
Rename equations to model operator by @YohannParis in #2969
Select which model card to display by @YohannParis in #2966
Update model to equations call by @YohannParis in #2968
Display nicer names for model framework by @YohannParis in #2970
reorg ciemss ensemble simulate by @mwdchang in #2975
Add some more docs / comments relating to taskrunner by @kbirk in #2978
feat: structural model comparison by @shawnyama in #2980
Jamie operator placeholder image bonanza by @jamiewaese-uncharted in #2760
chore(deps): update authzed/spicedb docker tag to v1.29.5 by @renovate in #2985
fix(deps): update dependency extended-eventsource to v1.4.6 by @renovate in #2986
chore(deps): update dependency esbuild to v0.20.1 by @renovate in #2987
chore(deps): update dependency eslint to v8.57.0 by @renovate in #2988
Feat: Add optimize_result.json to the output panel by @Tom-Szendrey in #2981
feat: add amr-to-mmt function to mira task runner by @mwdchang in #2984
feat: mmt parsing by @mwdchang in #2979
Fix broken document stats, add workflow stat, add tooltips by @jamiewaese-uncharted in #2991
Fix delay when shutting down task process by @kbirk in #2997
fix broken PDF viewer in workflow document drilldown by @jamiewaese-uncharted in #2995
Add askem admins to all projects by @bigglesandginger in #2989
fix: rename reserved keywords by @mwdchang in #2992
Improve the design of the GoLLM model comparison by @YohannParis in #2972
Configure model operator: don't show placeholder if a model is attached by @jamiewaese-uncharted in #2999
Jamie refinement of add a note feature - text box opens in focus mode by @jamiewaese-uncharted in #3000
fix: once a new output is generated update the selected output to it by @shawnyama in #2994
One more time fix the AssetType by @YohannParis in #2847
Add link-amr, variable-extraction, cosmos-pdf-extraction by @kbirk in #2977
feat: adopting MMT part 1 - diagrams by @mwdchang in #3003
decapodes operator by @blanchco in #2993
a few small style tweaks to the add-a-note feature by @jamiewaese-uncharted in #3006
Jamie add legend to compare models chart by @jamiewaese-uncharted in #3005
Open rename workflow text field in focus mode by @jamiewaese-uncharted in #3007
Fix issue when a lack of modelId makes the UUID from string bug by @YohannParis in #3013
Replace bad defaults with actual filename by @kbirk in #3009
Jamie remove edit buttons from model equations, fix unnecessary gap by @jamiewaese-uncharted in #2845
reorganize ciemss calibrate by @mwdchang in #3011
Semantics table rework pt1 by @blanchco in #3010
Add risk chart to optimize output panel by @Tom-Szendrey in #3015
Update the workflow context menu by @YohannParis in #3019
Improve some error message by @YohannParis in #3017
Feat: simulate ensemble appending ports by @Tom-Szendrey in #3023
made code blocks bigger, moved dropdowns to top by @jamiewaese-uncharted in #3024
feat: save model compare state by @shawnyama in #2998
feat: adpoting mmt part 2 by @mwdchang in #3012
Remove model observables section & Prettify model card by @jamiewaese-uncharted in #3029
adding default names and values to model parameters by @dgauldie in #3032
Jamie model page adjustments per pascale by @jamiewaese-uncharted in #3028
chore(deps): update actions/add-to-project digest to e68179e by @renovate in #3041
chore(deps): update dependency esbuild to v0.20.2 by @renovate in #3042
fix(deps): update dependency axios to v1.6.8 by @renovate in #3043
set default parameter values to 1 by @dgauldie in #3039
chore(deps): update dependency @types/lodash to v4.17.0 by @renovate in #3044
semantic table change pt2 by @blanchco in #3018
Remove last three KM endpoints by @kbirk in #3030
Added user content editor in the overview page by @jryu01 in #3034
multicharts for ciemss-simulate, reorg chart actions by @mwdchang in #3035
accommodate mixed types by @mwdchang in #3049
Jamie prettify simulate with py ciemss by @jamiewaese-uncharted in #3037
feat [hmi-client]: Add number of users logging in banner by @dvince2 in #3052
2976 feat search for datasets esgf era5 terarium by @dvince2 in #3033
Added welcome video to the home page banner by @jamiewaese-uncharted in #2954
Match client to server KnowledgeController refactor by @bigglesandginger in #3027
apply suggested configs by @blanchco in #3053
Ts/3016 task beaker better erroring by @Tom-Szendrey in #3054
Task: Change optimize output to be a simulation ID by @Tom-Szendrey in #3048
fix: missing search item component by @shawnyama in #3059
limit the height of a dropdown menu to 400px. Scroll on overflow by @dgauldie in #3060
bugfix-stratify-edit by @blanchco in #3063
Making profile have an optional documentId by @dvince2 in #3065
Add test for problematic amr. Add mroe logs to debug issue. by @kbirk in #3070
Simulate ensemble - minor cleanup by @Tom-Szendrey in #3069
Jamie fix tooltip swatch colors in simulation chart by @jamiewaese-uncharted in #3071
ensemble cleanups 2 by @Tom-Szendrey in #3073
fix cases where 0 doesn't show up by @mwdchang in #3076
Fix issue with stalled requests if shutdown by @kbirk in #3075
fix[hmi-client]: Handle Missing Queued Task by @dvince2 in #3072
fix[hmi-client]: Show preview in drilldown by @dvince2 in #3077
Update how the message are sent for PDF extraction by @YohannParis in #3055
fix link by @jamiewaese-uncharted in #3079
Use all dataset ids rather than just the first by @kbirk in #3082
switched project overview to be a byte array by @dgauldie in #3081
Jamie fix tooltip swatch colors in simulation chart by @jamiewaese-uncharted in #3083
fix[hmi-server]: Fetch pyciemss error messages by @dvince2 in #3084
Ts/3067 calibrate ensemble by @Tom-Szendrey in #3086
save a document from explorer (2) by @bigglesandginger in #3062
Ts/3066 ensemble cleanups 3 by @Tom-Szendrey in #3078
Remove auto delete from queue by @kbirk in #3090
ensemble cleanups 4 by @Tom-Szendrey in #3089
chore: operator chart clean up by @mwdchang in #3088
set default code and document text to a empty string instead of an er… by @dgauldie in #3093
assign other concepts by @blanchco in #3091
calibrate ensemble 2 by @Tom-Szendrey in #3094
Fix profile dataset regression by @kbirk in #3096
Optimize -> Proxy Chart by @Tom-Szendrey in #3101
feat: create subset data operator by @shawnyama in #2619
Remove knowledge-middleware container from local docker-compose by @kbirk in #3097
Fix the model card request in extraction service by @kbirk in #3099
Return transitive error codes by @kbirk in #3103
change column from 255 to 4096 by @bigglesandginger in #3106
fix[hmi-server]: Pack metadata on climate dataset by @dvince2 in #3104
fix[hmi-server]: Fixing Knowledge errors by @dvince2 in #3105
gatekeep request by checking presence of esgfId by @bigglesandginger in #3108
Jamie prettify subset dataset by @jamiewaese-uncharted in #3111
feat: Show esgf metadata by @shawnyama in #3112
default to dopri5 by @Tom-Szendrey in #3114
fix parameter update overwrites by @mwdchang in #3115
deal with new preview output by @bigglesandginger in #3110
Jamie's Prettify Optimize redone by @Tom-Szendrey in #3117
metadata may not always contain format by @Tom-Szendrey in #3118
fetch dataset fix - 2 by @Tom-Szendrey in #3119
using dan's code better by @Tom-Szendrey in #3121
fix[hmi-server]: Allowing errors to pass by @dvince2 in #3124
Jamie adjust width of save as dialog in Stratify operator by @jamiewaese-uncharted in #3123
Update tera-parameter-table.vue by @blanchco in #3095
Better errors for KnowledgeController, log 4XX errors by @kbirk in #3127
add previews to image folder by @bigglesandginger in #3122
Changes to model extraction by @kbirk in #3109
Optimize adding adding maxiter, Maxfeval by @Tom-Szendrey in #3116
Regridding operator by @bigglesandginger in #3120
Update minio source by @YohannParis in #3129
Jamie make transform dataset notebook prettier by @jamiewaese-uncharted in #3020
stretch out simulation ensemble chart by @Tom-Szendrey in #3130
fix[hmi-server]: Improving xDD errors by @dvince2 in #3131
3067 calibrate ensemble 3 by @Tom-Szendrey in #3126
Make transform dataset notebook item menu working by @jryu01 in #3132
Jamie prettify ensemble simulate by @jamiewaese-uncharted in #3102
partial fix to not being able to switch to configure parameter value … by @mwdchang in #3133
Jamie remove green from parameter tables by @jamiewaese-uncharted in #3135
feat: show pyciemss errors by @shawnyama in #3125
add logging of 403 and 401 errors by @dgauldie in #3138
funman monoton weights by @mwdchang in #3098
Use date-utils to display timestamp in evaluation results by @YohannParis in #3136
Small document asset fixes by @YohannParis in #3139
fix(model editor): save notebook code generated from wizard actions by @shawnyama in #3140
fix[hmi-client]: Set multiple users by defaults by @dvince2 in #3144
Correct regrid context. by @Tom-Szendrey in #3143
debug for nelson by @mwdchang in #3148
Jamie correct padding for all operators by @jamiewaese-uncharted in #3149
updating model edit sample Questions with units by @Tom-Szendrey in #3152
fix: add subset to project and show subset preview by @shawnyama in #3151
3147 new user can get 403 even though admin has added them to public group by @bigglesandginger in #3155
fix[hmi-server]: Cosmos extraction fix by @dvince2 in #3156
fix(deps): update dependency katex to v0.16.10 [security] by @renovate in #3158
fix[hmi-server]: Cosmos extraction fix by @dvince2 in #3160
chore(deps): update actions/add-to-project digest to fd6d5b1 by @renovate in #3162
chore(deps): update gradle/gradle-build-action digest to 942d5e1 by @renovate in #3163
chore(deps): update gradle/wrapper-validation-action digest to b231772 by @renovate in #3164
funman tweaks by @mwdchang in #3157
refactor: dataset cleanups by @shawnyama in #3161
fix(deps): update dependency ace-builds to v1.32.8 by @renovate in #3165
feat: dedicated stockflow tables by @shawnyama in #3046
ensure parameter distirbution is there before going into config tables by @mwdchang in #3168
Optimize update - inf params, minor interface update by @Tom-Szendrey in #3167
Protect getModel NPE error by @bigglesandginger in #3170
allow 4GB file uploads by @bigglesandginger in #3166
distribution range by @mwdchang in #3171
Remove download of dataset if not on the data tab by @YohannParis in #3172
Download file for Dataset by @YohannParis in #3169
remove code part of the model card request by @dgauldie in #3176
Added an edit icon to the annotation note to indicate that it's editable by @jamiewaese-uncharted in #3178
fix[hmi-server]: Better error handling by @dvince2 in #3177
sanity check warnings by @mwdchang in #3181
Jamie adjust petrinet transition matrix rectangle widths by @jamiewaese-uncharted in #3113
model metadata null error by @bigglesandginger in #3183
fix[hmi-server]: Better error handling by @dvince2 in #3182
more lenient threshold by @mwdchang in #3184
Fix Align AMR by @YohannParis in #3179
adding more user options to calibrate by @Tom-Szendrey in #3185
more time for calibrate by @mwdchang in #3188
Increase timeout for FeignClient from 60s to 5min by @kbirk in #3189
adding add chart by @Tom-Szendrey in #3190
Extend notebook clone to regrid-operator by @mwdchang in #3187
feat: tera-input-number widget by @shawnyama in #3186
fix: check for subset id by @shawnyama in #3191
Jamie fix calibrate ensemble mapping columns by @jamiewaese-uncharted in #3192
Expand climate-data error handling by @bigglesandginger in #3195
Set timespan for dataset values by @Tom-Szendrey in #3197
fix ciemss calibrate output switching by @mwdchang in #3200
Optimize - adding start_time as an option for intervention type by @Tom-Szendrey in #3202
display gollm extractions by @YohannParis in #3199
remember matrix configuration of last edit action by @mwdchang in #3203
remove knowledge middleware by @bigglesandginger in #3205
display gollm extractions by @YohannParis in #3204
fix[hmi-server]: Download netcdf assets by @dvince2 in #3207
Move all to new paradigm. adding spinner by @Tom-Szendrey in #3208
adding chart to node by @Tom-Szendrey in #3213
Yohannparis/display gollm extractions by @YohannParis in #3210
Adding end time to pyciemss calibrate by @Tom-Szendrey in #3215
Model obs + no slider by @Tom-Szendrey in #3214
display gollm extractions by @YohannParis in #3218
optimize input fixes by @mwdchang in #3219
missing field in save state by @mwdchang in #3220
feat: open operator drilldown based on url by @shawnyama in #3217
Made the project description text primary dark by @ngraham76 in #3223
chore(deps): update actions/add-to-project digest to 2e5cc85 by @renovate in #3228
fix(deps): update dependency ace-builds to v1.32.9 by @renovate in #3229
fix(deps): update dependency org.elasticsearch.client:elasticsearch-rest-high-level-client to v7.17.19 by @renovate in #3230
chore(deps): update authzed/spicedb docker tag to v1.30.0 by @renovate in #3231
Removed corner radius from overview text edit toolbar, removed bottom border from banner by @ngraham76 in #3224
fix[hmi-server]: Improved Climate Errors by @dvince2 in #3235
refactor: explorer source dropdown by @shawnyama in #3226
Darkened operator annotation text, removed indent by @ngraham76 in #3236
chore: cleanup apr 2004 by @mwdchang in #3227
fix[hmi-server]: Improved Code Errors by @dvince2 in #3237
fix[hmi-server]: Improved Funman Errors by @dvince2 in #3238
Reduce num samples/num iterations for default run time by @Tom-Szendrey in #3234
fix[hmi-server]: Improved Mira Errors by @dvince2 in #3239
fix[hmi-server]: Controller Cleanup by @dvince2 in #3240
refactor: tidy up resource bar new buttons by @shawnyama in #3242
Ensemble - missing imports? by @Tom-Szendrey in #3244
Update vscode extension recommendations by @kbirk in #3246
updating optimize params and es mapping by @Tom-Szendrey in #3252
refactor: operator annotation in drilldown component instead of within every operator by @shawnyama in #3245
fix[hmi-client]: Configuration column in parameter table by @dvince2 in #3254
chore(deps): update dependency vite to v5.0.13 [security] by @renovate in #3250
Add matrix string field to config from dataset endpoint by @kbirk in #3253
3232 Allow charts to be removed in TA3 operators by @jryu01 in #3255
forecast should include the calibration like opt by @Tom-Szendrey in #3259
fix: import inputnumber by @shawnyama in #3262
config-from-dataset - Add class for req body by @kbirk in #3257
fix[hmi-server]: GoLLM exception handling by @dvince2 in #3258
feat: add string matching for automapping in calibration by @shawnyama in #3264
funman update by @mwdchang in #3193
monotonicity changes by @mwdchang in #3269
Subset output top corner radius removed (below tabs) by @ngraham76 in #3267
chore: remove unused functions by @mwdchang in #3270
Display GoLLM unalign extractions in the other concept accordion by @YohannParis in #3266
feat: input chips in drilldown header by @shawnyama in #3271
Updates and clean up - Validate Configuration UI by @ngraham76 in #3263
calibrate ensemble mapping by @Tom-Szendrey in #3268
fix: vue components don't like it when you import Component by @shawnyama in #3273
fix: forget about using Component for now by @shawnyama in #3274
Return stdout / stderr on TaskResponse. Log stdout / stderr on failure. by @kbirk in #3272
Optimize interventions: by @Tom-Szendrey in #3275
chore(deps): update gradle/gradle-build-action digest to bdf99f9 by @renovate in #3278
fix(deps): update dependency extended-eventsource to v1.4.9 by @renovate in #3279
chore(deps): update dependency @rushstack/eslint-patch to v1.10.1 by @renovate in #3280
chore(deps): update dependency eslint-plugin-vue to v9.24.0 by @renovate in #3281
Model config apply config also appends to node by @Tom-Szendrey in #3285
Readme - WSL install instruction by @asylves1 in #3289
feat(stratify): select stockflow variables by @shawnyama in #3291
Fixed model diagram buttons - transparent BG bug. by @ngraham76 in #3288
Constraint form UI clean up by @ngraham76 in #3277
NPE accessing a document assets "optional" Metadata by @bigglesandginger in #3292
feat(model-edit): edges are linked to port positions by default by @shawnyama in #3284
remove null casuing empty state by @asylves1 in #3293
add name to placeholder document by @dgauldie in #3298
TA1 hosted in staging by @bigglesandginger in #3300
fix(model diagram): watcher shouldn't be called while template card moves by @shawnyama in #3294
Missing users from Share Dialog by @bigglesandginger in #3299
bug[hmi-client]: Unable to save github repo as code asset by @dvince2 in #3305
Workflow refactor by @kbirk in #3276
feat: improve bound range indicators by @mwdchang in #3302
fix for bug "Cannot save project overview content" by @dgauldie in #3308
Small refactor for the clone methods by @kbirk in #3311
model function for getting and updating values by @blanchco in #3314
Save sciml calibrate loss func by @Tom-Szendrey in #3318
Remove Provenance from Postgres (and clean up the unused calls) by @bigglesandginger in #3310
Palantir java format by @YohannParis in #3317
Treat Workflow transform as a local change by @asylves1 in #3321
chore(deps): update actions/add-to-project digest to 9bfe908 by @renovate in #3325
chore(deps): update gradle/gradle-build-action digest to 8baac4c by @renovate in #3326
chore(deps): update gradle/wrapper-validation-action digest to 460a3ca by @renovate in #3327
chore(deps): update authzed/spicedb docker tag to v1.30.1 by @renovate in #3328
simplify model config state by @blanchco in #3324
Palantir java format with Tabs by @YohannParis in #3329
feat[hmi-client]: The Documents / Models / Dataset switcher on the E… by @dvince2 in #3323
feat: transition matrices for model diagram by @shawnyama in #3306
Added process notification panel by @jryu01 in #3315
Fixed missing return statement by @jryu01 in #3339
fix infinite succes on extractions by @blanchco in #3335
WIP integration by @dgauldie in #3341
Update github actions by @YohannParis in #3351
Fix the issue that editor pane jumps around when scrolling by @jryu01 in #3356
fix: parameter unit assignment when adding a template card by @shawnyama in #3358
move funman components by @blanchco in #3362
Update SecurityConfig.java by @YohannParis in #3342
move stratification by @blanchco in #3368
move optimize by @blanchco in #3367
Notification Persistence by @kbirk in #3312
move workflow to components by @blanchco in #3371
Bump tar from 6.2.0 to 6.2.1 by @dependabot in #3301
fix(model-edit): executed code is saved properly by @shawnyama in #3374
change model symbol and diagram font to latin modern by @asylves1 in #3370
Client events allow multiple tabs by @bigglesandginger in #3378
Taskrunner intermediate progress by @kbirk in #3376
add missing checkmark for input by @asylves1 in #3380
fix document metadata by @blanchco in #3373
refactor removal into send by @bigglesandginger in #3382
Should fix tests by @kbirk in #3384
Remove unused es-ingest package by @kbirk in #3385
remove notification test by @mwdchang in #3383
TaskRunner bandaid solution by @kbirk in #3377
Fix notification for tasks to include the user id by @kbirk in #3372
Taskrunner tests to CI as its own workflow by @kbirk in #3386
remove unused function by @mwdchang in #3387
Adding cancel to the pyciemss drilldowns by @Tom-Szendrey in #3337
Fix taskrunner ci by @kbirk in #3390
Fix taskrunner python code by @kbirk in #3392
Pyciemss Cancel button styling by @Tom-Szendrey in #3393
feat: funman taskrunner by @mwdchang in #3375
fix: missing makefile entries by @mwdchang in #3397
chore(deps): update dependency @rushstack/eslint-patch to v1.10.2 by @renovate in #3405
fix(deps): update dependency org.elasticsearch.client:elasticsearch-rest-high-level-client to v7.17.20 by @renovate in #3406
chore(deps): update authzed/spicedb docker tag to v1.31.0 by @renovate in #3407
chore(deps): update dependency eslint-plugin-vue to v9.25.0 by @renovate in #3408
fix broken mmt call by @blanchco in #3409
fix(vite config): beaker urls by @shawnyama in #3414
fix: restrict access to flattened view until decomposed view is loaded by @shawnyama in #3396
Small fix for missing datatype after Enrich Dataset by @asylves1 in #3413
Make event data col text by @kbirk in #3400
Remove hibernate bytecode enhancements by @kbirk in #3394
Flyway migration by @kbirk in #3417
Remove broken link add Figtree font by @asylves1 in #3420
import model name when adding to project by @blanchco in #3418
fix for sharing input clearing by @asylves1 in #3425
Consolidate all taskrunner code by @kbirk in #3427
Split image building by @YohannParis in #3369
3344 task migrate simulation to postgres by @dvince2 in #3423
feat: model configurations can be accepted into stratify and model edit by @shawnyama in #3426
3353 handle persisted notifications by @jryu01 in #3412
refresh document on extractions complete by @blanchco in #3401
feat: funman taskrunner api plumbing by @mwdchang in #3411
3410 bug missing concepts and datatype in dataset enrichment by @dgauldie in #3422
refresh dataset on change by @blanchco in #3434
migration_of_sims by @dvince2 in #3435
fix: make sure id isn't present when saving as a new model by @shawnyama in #3436
feat: expressions in initial table by @shawnyama in #3440
3443 bug owner does not show up in table view on the homepage by @dgauldie in #3444
First pass at manual testing by @YohannParis in #3449
Added documentation urls by @jryu01 in #3437
UX adjustments and refinement to Notifications panel by @ngraham76 in #3448
test by @mwdchang in #3455
fix CI builds for taskrunners by @dgauldie in #3459

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@dependabot made their first contribution in #1951
@ngraham76 made their first contribution in #3223
@asylves1 made their first contribution in #3289

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